| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1864 |
|---|
| Symbol | |
|---|
| ID | 4924338 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 2142641 |
|---|
| End bp | 2143150 |
|---|
| Gene Length | 510 bp |
|---|
| Protein Length | 169 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640163432 |
|---|
| Product | PTS system glucose-specific transporter subunit |
|---|
| Protein accession | YP_001093989 |
|---|
| Protein GI | 127512792 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2190] Phosphotransferase system IIA components |
|---|
| TIGRFAM ID | [TIGR00830] PTS system, glucose subfamily, IIA component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.0000188861 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGGATTTT TGAGCCGCAT AAGACGTTTA ATTTCTGGTC AGCCACCTAT CACGGGCGGC
ATCGACGTGT ACGCGCCAGT GTCGGGCGAG ATAGTGGCTA TCGAGAAAGT GCCGGATGTG
GTCTTTGCCG AGAAGATAGT CGGTGACGGT ATTGCCATCG CGCCCAAGGG CAAACAGATA
GTGGCGCCGG TAGATGGCAC CATAGGTAAG ATTTTCGAAA CCAACCACGC CTTCAGTATC
GAGTCACCCC AAGGGCTCGA GCTGTTTGTG CATTTCGGCG TCGGCACGGT AGAACTCAGG
GGCAACGGCT TTACCCGTCT GGCCGAAGAG GGTCAACAGG TTAAGGCTGG CGATCCCATA
CTCGAATTCG ATCTCGACTA CCTCAAGGCC CATGTCGAGA GCCTGCTCAC GCCTGTGGTG
CTGGCGAACA TGGAAGATAT TCAGGGACTC GACAAGCGTC ACGGCAGTAT CGAAGCCGGT
AAAGATGTGA TCTTCTCGGT TCAGCTTTAA
|
|---|
| Protein sequence | MGFLSRIRRL ISGQPPITGG IDVYAPVSGE IVAIEKVPDV VFAEKIVGDG IAIAPKGKQI
VAPVDGTIGK IFETNHAFSI ESPQGLELFV HFGVGTVELR GNGFTRLAEE GQQVKAGDPI
LEFDLDYLKA HVESLLTPVV LANMEDIQGL DKRHGSIEAG KDVIFSVQL
|
|---|
| |