| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1862 |
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| Symbol | |
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| ID | 4924306 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2140883 |
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| End bp | 2142013 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640163430 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_001093987 |
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| Protein GI | 127512790 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000241136 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCCAGG ATGTCCTCAC GCTGGCCCAG GATCTGATTG CCAGAGCCTC GGTCACCCCG
CTAGACGAAG GTTGTCAGCC ACTGATGGCC AAACGCCTCG CGGCCAAGGG ATTTAATATC
GAGCCTATGG TGTTTGAAGA CACCACCAAT ATGTGGGCGC GACGCGGCGA TCAAGGCCCG
CTGTTTTGCT TTGCCGGCCA TACGGATGTG GTGCCAGTGG GCGATCTTAA TCGCTGGCAC
ACACCGCCCT TCGAGCCCGT GGTGATCGAC GGCTACCTTC ACGGACGCGG CGCCGCCGAC
ATGAAAGGCT CACTGGCCGC CATGGTGGTC GCCACCGAGC GTTTCGTCGA CAAGCACCCG
GATCACAAAG GCTCCATCGC CTTTCTGATC ACCAGCGACG AGGAAGGCCC CTTCATCAAC
GGTACCACGC GGGTGATCGA CACCCTGGAG GCCCGCAACG AGAAGATCAC CTGGTCTCTG
GTTGGCGAGC CATCATCTAC CCATAAGCTG GGGGATATCG TCAAGAATGG CCGTCGCGGC
AGCCTCACGG GTAACCTCAC CGTCAAGGGC GTTCAGGGCC ATGTCGCCTA TCCCCATCTG
GCCGACAATC CTATCCACAA GGCGGCCCCC GCCCTGGATG AACTGGCGCG CATGAAATGG
GACAACGGCA ACGAGTTTTT CCCGCCTACC AGTTTTCAAA TCGCCAATAT CAATGGCGGC
ACTGGCGCCT CAAACGTGAT CCCGGGTAGC CTGGAGGTGA TGTTTAACTT CCGCTACTCC
ACCGAAGTTA CCGCGGAGAT CTTGATCCAG CGGGTTCTCA ACATCTTAGA TGCCCATGGA
CTGGACTATG ATATCAGCTG GATCTTCAAC GGCCTGCCGT TTCTCACCGA CGCGGGGCCG
TTGCTGGACG CCACCCGCGA AGCCATCTAC GAGATCACGG GCACAGAGAC CGATCCCCAG
ACATCGGGCG GCACCTCGGA TGGGCGCTTC ATCGCCCCCA CGGGCGCCCA GGTGATCGAG
CTTGGCCCGG TTAACGCTAC CATTCACAAG GTGAACGAGT GCGTCAAGGT CGAGGATATC
GAGCAGCTGG CCAAGGTGTA TGAACGTATC CTGGAAAAAC TGCTTTGCTA A
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| Protein sequence | MSQDVLTLAQ DLIARASVTP LDEGCQPLMA KRLAAKGFNI EPMVFEDTTN MWARRGDQGP
LFCFAGHTDV VPVGDLNRWH TPPFEPVVID GYLHGRGAAD MKGSLAAMVV ATERFVDKHP
DHKGSIAFLI TSDEEGPFIN GTTRVIDTLE ARNEKITWSL VGEPSSTHKL GDIVKNGRRG
SLTGNLTVKG VQGHVAYPHL ADNPIHKAAP ALDELARMKW DNGNEFFPPT SFQIANINGG
TGASNVIPGS LEVMFNFRYS TEVTAEILIQ RVLNILDAHG LDYDISWIFN GLPFLTDAGP
LLDATREAIY EITGTETDPQ TSGGTSDGRF IAPTGAQVIE LGPVNATIHK VNECVKVEDI
EQLAKVYERI LEKLLC
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