| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1861 |
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| Symbol | |
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| ID | 4921291 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2140137 |
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| End bp | 2140889 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163429 |
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| Product | peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin |
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| Protein accession | YP_001093986 |
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| Protein GI | 127512789 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1876] D-alanyl-D-alanine carboxypeptidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000232027 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGCTAACCC CTGACGCCAA TAGCCGTAAG GCCGCCGAAG CCCTAGCTAG CACTAGCGAG
CAAATGGATC TTTACGGCGA AGGCAACTTG CCCCTGATGG AATGTCAGGG GCACAGATTA
GCCCCCGAGT GCGCCGCCCA GTTCATTAAG ATGCAGACAG CCGCCGCCAT TGATGGCATA
GAGATAGCCA TCTGCTCTAG CTACCGCGAT TTTGACCGCC AGCTCGGGAT CTGGAATGCC
AAGGCGAGTG GCAAACGGCC TGTTCTAGAC AAGGCCTCTC GCCCCATAGA TATCCAGCGC
TTAGACGATA ATCAGCTGCT AGATGCCATC CTGCTCTGGT CGGCAATGCC GGGCATGTCG
CGCCATCACT GGGGCACAGA TCTCGACCTG TTTGATGCCA AAAACATCAG CCGTGAATCG
TTACAACTCA TCGACAGCGA ATATCACCCG GGCGGCCCCT GTCATCAGCT GCATCTGTGG
TTAATGGCAA ATGCCGCCGA TTTCGGCTTC TATTTTCCCT ATCAATTGGG TCTAAGTGGC
GTCAGCCCAG AGCCCTGGCA CCTGAGCTAT TATCCCCTCG CCGATACGTA TCTGGCCACC
TTCGATACAG ATAAGCTTAA GGCGCGGCTC GAGCAGGCGA ATATTGAGCT TAAGGCCCCT
ATTCTCACCC GTCTGGAGGC GCTGGTTTCG CGCTACGTCT ATTTTGTCGC GCCCTCACCA
AACGGGCCGG TTAACCCCAT TATCAAGAAG TGA
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| Protein sequence | MLTPDANSRK AAEALASTSE QMDLYGEGNL PLMECQGHRL APECAAQFIK MQTAAAIDGI
EIAICSSYRD FDRQLGIWNA KASGKRPVLD KASRPIDIQR LDDNQLLDAI LLWSAMPGMS
RHHWGTDLDL FDAKNISRES LQLIDSEYHP GGPCHQLHLW LMANAADFGF YFPYQLGLSG
VSPEPWHLSY YPLADTYLAT FDTDKLKARL EQANIELKAP ILTRLEALVS RYVYFVAPSP
NGPVNPIIKK
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