| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1850 |
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| Symbol | |
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| ID | 4924298 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2125619 |
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| End bp | 2127991 |
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| Gene Length | 2373 bp |
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| Protein Length | 790 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640163418 |
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| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
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| Protein accession | YP_001093975 |
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| Protein GI | 127512778 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.136475 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00884897 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCAGCTA AGGTGCCACT GCAGGATGTA GACGCAAAAT ATCTAAAGAT CATCAGTGAG
TTTGCCATCG ACATGCTCTC TCTGAGCGGC GTGGATGAGA TCCTCTGGCA TCTGGCGCAG
AATGTGGTCT CCCAGCTGGG GTTCGATGAT GTGGTGGTCT ATCTGCTGGA TCCCGCCCGG
GGCGTCTTGA TGCAGAAGGC CAGCTTCGGC GACAAGAATC CCAGCGGCCA TGAGATCCTC
GCGCCCATAG AGCTCAAGCT GGGGGAAGGG GTGGTTGGTA CCGTGGCCAA GACCAAGCAG
CCCCTGAACG TTACCGACAC CCGGCTGTTC CCCAACTATA TCGTCGATGA TGCCCCAAGG
CTCTCCGAGC TCGCCGTGCC CATGTTGATG GAGGGGGAGG TGATCGGAGT GATTGATACC
GAACATCCAA AGAAGAATTT CTACACGCCC CACCATGAGC GAATTTTATT TGCGCTGGCC
TCTATCGCGG CGCTGAAGAT CCACAGAGCC AATAATCTGG TGACGCTGCA AAAGCGGGTG
GCCGAGTTGG AATATGCCAG CAAGATCCAA GATACCCTGT TTGCCATAGC CGAGATCATC
TTCGAGACCG ATTCCATCAA GGCCTTCTAC CAGAAACTGC ACACCTGTAT CGCCCGCCTG
CTCAAGGCTG ACAACTTCTA TGTGGCGCTG CTCAGCGATG ATGGCCAAAC CTTGCACTTT
CCCTACCATG TAGATCAGTA CGATCATCTT GCAGAAGACG CCGAGCAGCC CCTGTTACCG
ACCCGTCTTG GGATCACTGG CTATGCACTG CTTAAGAATC GGCCGCTGTT GGCCCATGAA
GGGCAGATTC AGGCGTTGGT GGATCAGGGG GAGATAGTGA TCAATGGCGC CATGCCAACG
GCCTGGCTCG GGGTGCCCTT TGGCGACGAG GCGTTTCGTG GCATCGTCGT GGTGCAGAGT
TATCATGGTG ATTATCGTTA TAGCGAAGCC GATCAGCAGC TGCTGGTGTT TACTGCCAAG
CATATACGTA ACGCCATCAG CCGCATGAAG CTCAAGGCCA ATCTTACTGA GATGGCCCTC
TATGATGGCT TAACTGGGCT GCCCAATCGC ACCCTGTTCA TCGACCGCCT CAATCAGGCC
ATCGCCAAAC TGAATGACGC TTGTAACGAC GCTGCATCTG CTGCTGGGGT TGGGCTGGTG
CTGCTGGATA TCGACCATTT TAAGGCGGTT AACGATACCT ATGGTCACCA TCTTGGGGAT
GAGCTGCTTA AGGTGTTTGC CGAGCGCATC CATGCCGCGA TAGCGAGCCA GGATACCTTC
TGCCGACTCG GGGGGGATCA ATTTGGTCTG CTGTTGGTGG ATATCAATTC AGAGGAGCAG
TGCCTGGAGC GGGTCGAAGC CCTGCGAGAG CAGATGCAAG CCGTGCTGGA TCTCGGCGGG
ATCTCGCTTA CCTTGTCCGT CAGCATGGGG CTGGTGACCT GTTTCTCACC CGGGATGCAG
GTGACGGATC TGCTGCGCAT GGGGGATCAG TCGCTGCTAA GGGCCAAGCT GATGGGACGG
CACAGGCTTT GTGTGTTCAC AAGTGGCGAG CAGGCGGAGC TTCAGGAGGC GCAGATATGT
CAGGCGTTTC AGCAGGCCGC AGATCAAGGT GAGCTCTATT TCAGTTTTCA ACCTCAATAC
CGGCTCAAGG ATGGCAAACT CCTAGGGGCA GAGGCGCTGC TACGTTGGCA GCATCCAAGA
TTAGGTACCA TCTCACCACG GCGATTGCTT GCGCCGCTGC GCCGACAAGG CGCCCTCGAG
CTGGTGGATG CTGTGGTCGC TAAGCTTATC CTGGCTCATC TTAAGCGTTA TCACGGCGAC
TATCCCGAGG GATTTCGCCT CAGCGTGAAC ATAGCCTGTG ACGGCTGCGC CTTGTTTGAT
GCGCTAGGGA GAATGGCCGG GGAGGGCATC GAGCTGGCAT CTTATCTGGG CATAGAGATC
CCTGAGTCCA GCCTCGGCGC CTCGTTCGAG GCGGTAGTTA GCTGTATCGC ACGGGCAAAG
TCTCTCGGCG TGCTGGTGAG CCTGGATGAT GTAGGTGCCA GCCACGCTAC TTTTAAATAT
CTGCAGGAGT TCAGGTTCAA TCGCCTCAAG ATAGCCCAAG GGCTCATCAG TCCAATGGAG
ATGGCCTATG ACAACCAGGT TATTTTGGAG ACCATCATCA ATCTCGCCAG CACGTTGAAT
ATCGATACCC TGGCGCAGGG GATTGAAACC CGCGAGCAGT ACCAGACGAT GCAGGCTCTG
GGGTGCGACT ATGGTCAGGG GGAGTTTATG AATCCCTCCG TCAGCGAGGA AAAGCTACTG
CTTATGCTGA CAGAGTCCCA TCTATATAGA TGA
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| Protein sequence | MPAKVPLQDV DAKYLKIISE FAIDMLSLSG VDEILWHLAQ NVVSQLGFDD VVVYLLDPAR
GVLMQKASFG DKNPSGHEIL APIELKLGEG VVGTVAKTKQ PLNVTDTRLF PNYIVDDAPR
LSELAVPMLM EGEVIGVIDT EHPKKNFYTP HHERILFALA SIAALKIHRA NNLVTLQKRV
AELEYASKIQ DTLFAIAEII FETDSIKAFY QKLHTCIARL LKADNFYVAL LSDDGQTLHF
PYHVDQYDHL AEDAEQPLLP TRLGITGYAL LKNRPLLAHE GQIQALVDQG EIVINGAMPT
AWLGVPFGDE AFRGIVVVQS YHGDYRYSEA DQQLLVFTAK HIRNAISRMK LKANLTEMAL
YDGLTGLPNR TLFIDRLNQA IAKLNDACND AASAAGVGLV LLDIDHFKAV NDTYGHHLGD
ELLKVFAERI HAAIASQDTF CRLGGDQFGL LLVDINSEEQ CLERVEALRE QMQAVLDLGG
ISLTLSVSMG LVTCFSPGMQ VTDLLRMGDQ SLLRAKLMGR HRLCVFTSGE QAELQEAQIC
QAFQQAADQG ELYFSFQPQY RLKDGKLLGA EALLRWQHPR LGTISPRRLL APLRRQGALE
LVDAVVAKLI LAHLKRYHGD YPEGFRLSVN IACDGCALFD ALGRMAGEGI ELASYLGIEI
PESSLGASFE AVVSCIARAK SLGVLVSLDD VGASHATFKY LQEFRFNRLK IAQGLISPME
MAYDNQVILE TIINLASTLN IDTLAQGIET REQYQTMQAL GCDYGQGEFM NPSVSEEKLL
LMLTESHLYR
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