Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1838 |
Symbol | |
ID | 4924326 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 2115452 |
End bp | 2116162 |
Gene Length | 711 bp |
Protein Length | 236 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640163406 |
Product | DNA replication initiation factor |
Protein accession | YP_001093963 |
Protein GI | 127512766 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0593] ATPase involved in DNA replication initiation |
TIGRFAM ID | [TIGR03420] DnaA regulatory inactivator Hda |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0197732 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.185347 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCACCCC ATTCACCGGT ACAACTTTCT TTACCCGTCT ATCTGCCCGA TGATGAGACC TTTAACAGTT ATTATCCCGC GGCCGGTAAC GACGAGCTGA TCCTGAGCCT GCAGGCATCT GCCGAAGGGC GGGCCAACAA GGCCGTGTAC CTATGGGGCC CGGTCAAGGC AGGGCGTACC CATCTGATGC ACGCTACCTG TGCCAGAGCC AATGAGCTCA ATCGCAGCAG CTTCTATCTA CCGCTTGGCA TACACGCCAG CATCTCCACC GAACTGCTAG AGGGTCTGGA ACAGTTAGAT CTCGTCTGCA TCGATGATGT AGATGCCATT GCGGGGCATC CTCTATGGGA GGAGGCGCTG TTCGATCTTT ATAACCGGGT GGCGGAACAT AAGCGCTGCG CCCTGGTGGT GAGCGCCAGC GCAACGGCAA GCGATGCAGG ATTTGCCCTG CCGGATCTGG TGTCTCGTAT GCAGTGGGGG CTGACCTATC AGCTACAGCC TATGGCCGAT GAGGAGAAAC TGGCGGCGCT GCAACGCAGG GCCGCGATGC GCGGATTACA GCTGCCGGAA GATGTGGGGC GCTTCCTGCT CAATCGTCTG GCGCGGGATC TGCGTACCCT GTTCGATGTG CTCGATCGCC TGGACAAGGC ATCACTTGTC CATCAGCGTA AGCTCACCAT TCCCTTCGTG AAAGAGATGC TGCGCCTGTA G
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Protein sequence | MSPHSPVQLS LPVYLPDDET FNSYYPAAGN DELILSLQAS AEGRANKAVY LWGPVKAGRT HLMHATCARA NELNRSSFYL PLGIHASIST ELLEGLEQLD LVCIDDVDAI AGHPLWEEAL FDLYNRVAEH KRCALVVSAS ATASDAGFAL PDLVSRMQWG LTYQLQPMAD EEKLAALQRR AAMRGLQLPE DVGRFLLNRL ARDLRTLFDV LDRLDKASLV HQRKLTIPFV KEMLRL
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