| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1827 |
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| Symbol | |
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| ID | 4921707 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2103011 |
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| End bp | 2103577 |
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| Gene Length | 567 bp |
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| Protein Length | 188 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640163395 |
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| Product | methylation site containing protein |
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| Protein accession | YP_001093952 |
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| Protein GI | 127512755 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00097264 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGTAAAG TAAGCGGATT TACCCTGATT GAGTTAGTGG TGGTGATTGT CGTGTTGGCG
ATACTGGCCG TGGTTGCCTT GCCAAGGTTT ATCTCTGTGG GCCAGGATGC CCACGACAGC
GCGGCGAAGG GAGCGTTTGC CGCCTTTACC TCGGGTGTGT CCCTCTATCA CAGCTGCTGG
GCGGCTTCAG GGGCGAGTGG TCATGTGGTG GATCTCGCCT GTTTTGGTGA CGGTACTATC
GATTCGACCA CCACAGGCTA CCCGCTGGGG CAGACAACCC AGACAAGTGG AAACAATGGT
ACCCTGCTGC AAGGGGAGTT TTGTCGTCAA CTTTGGGAAG GCTTGTTAGA TAATAACGAC
TACCAGCTGG CGCCACATGA TAATGCGGCG TTTGGTGGCA GTAACGATAT CATCTACTGG
TACTCTGGTG GGGAGATCAG TAATAGTAAC ACCTATTGTT ACTTTAACTA TATTCGCGAT
AATCGCGCAA AAGGCAGTGA AAACTGGCAA TTAAGGTACT ATCCGGGTAC GGGCAAAACC
TTAATCACAC GTTCGACCCT CAGCTAA
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| Protein sequence | MRKVSGFTLI ELVVVIVVLA ILAVVALPRF ISVGQDAHDS AAKGAFAAFT SGVSLYHSCW
AASGASGHVV DLACFGDGTI DSTTTGYPLG QTTQTSGNNG TLLQGEFCRQ LWEGLLDNND
YQLAPHDNAA FGGSNDIIYW YSGGEISNSN TYCYFNYIRD NRAKGSENWQ LRYYPGTGKT
LITRSTLS
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