Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1825 |
Symbol | uvrC |
ID | 4924363 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 2099943 |
End bp | 2101772 |
Gene Length | 1830 bp |
Protein Length | 609 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640163390 |
Product | excinuclease ABC subunit C |
Protein accession | YP_001093950 |
Protein GI | 127512753 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0322] Nuclease subunit of the excinuclease complex |
TIGRFAM ID | [TIGR00194] excinuclease ABC, C subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.088783 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACAGATA GCTTTAATGC GACCCAGTTT TTAAAAACCG TTTCCTCCTC TGCCGGCGTT TATCGCATGT ACGATGCACA GGGGGTCGTT ATCTATGTGG GCAAGGCCAA AGATCTCAAG AAGCGCCTCA GCTCCTATTT CAGACGTAAT CTGCCCAACG TCAAGACTCA GGCCTTGGTG TCTCACATCG CCAATATCGA TGTGACTCTG ACCCCCAGCG AGACCGACGC GCTGATTCTG GAAAATGATT ACATCAAGCA GTACATGCCC AGATACAATG TGCTGCTTCG AGACGATAAG TCTTATCCCT ATATTTTCCT GAGCGGCCAT CGTCATCCAA GGCTCGCCTA TCACCGCGGG CCTCAGCGGG AGAAGGGGCA CTATTTCGGT CCCTATCCCA ATGGCGGCGC GGTGCGCGAA AGCCTGCATC TGATGCAGAA GCTGTTTCCT ATCAGACAAT GTGACGATCT TTACTATAAG GCGCGCTCCC GCCCCTGTTT GCAGTATCAG ATCGCTCGCT GCAGCGCCCC CTGTGTGGGT AAGATAAGCG ATGAAGATTA TGCCGAGCAG GTTAAGCTTG CCAGCCTGTT CCTGCGGGGC AAGGATCAAC AGGTGATCGC CACCTTGGTG GGCAAGATGG AGCAGGCGGC TATGGACCTC AATTATGAAG ATGCTGCCCG TTATCGTGAC CAGATCAGTG CGCTTCGCCG CGTCGCCGAG CAACAGGAGG TGTCCAGCGA CTCTGGCGAC ATGGATGTGA TTGGCGCCTA CTATGCCTCG GGCATCGCCT GTTTCCATCT GCTGTTTATT CGGAACGGCA AGATCTTCGG CAGTCGCAGC TATTATCCTA GTGTGCCGGA CGAGACTGAG GTCAGCGAGG TGCTGCGCGC CTTCATGTTG CAGTTTTATC TGAATGTCGA CAGTCAGCGC ACGCTGCCGA GAGAGATAGT GGTCAGCCAC GAGTTTGAAG ATATCCATGA GTTGGAAGAG GCAATTGCCC AGGCCTCCAA TAGACGCCTG CTGATCAAGA CCAAGGTGCG TAGCGAACGC GCCAGTTTCC TGCGTATCGC CGATGCTAAC GCCAAGAATG CGGTAGAGAC ACGTTTGTCC CACCAAAATA CCGTCGAGGA GCGTTTCCTG TTGCTAGAGG AGGCGCTGGA GCAGAGTCAG GCGATCAATC GCATGGAATG TTTCGATATC AGCCATACCA TGGGGGAGAG CACTGTTGCC TCCTGTGTGG TGTTTAATCG CGAAGGACCG AGCAAGGGTG AATATCGCCG CTATAATATC TCTGGGATCA CCCCGGGGGA CGATTATGCG GCGATGAAAC AGGCGATCGG TCGCCGCTTC GATAAGATAG AGGCCGACGG CAAGATCCCC GACATCCTCT TTATCGACGG CGGCATGGGA CAGCTGAGGA TTGCCCAGAA GGTGGTGAAC GAGAAGTTTG CTCACCTGGA TGTGGCACCG ACGCTCATAG GTGTGGCAAA GGGGGAGGGG CGTAAACCCG GACTCGAGAC TCTCATCTAT GGCGAGAACG AGGTGGCCTT TAGCTTACCG GCAGATTCCG GCGCGCTGCA TCTGATCCAA CATATTCGCG ACGAGTCACA CCGTTTCGCG ATAACTGGCC ACCGCAACAA ACGTCAGAAG ACCCGCAATA CCTCGACGCT CGAGTCTATC CCTGGGGTGG GGCCTAAGCG TCGTAAGGCG TTGCTGCAAT ACTTAGGTGG TTTACAGCAG GTTAAGGGGG CCAGCGTAGC GCAATTGTCT AAAGTGCCGG GCATTAGCCT AGAAATGGCA CAAACAATAC ATGATGCGTT GCGAGGGTGA
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Protein sequence | MTDSFNATQF LKTVSSSAGV YRMYDAQGVV IYVGKAKDLK KRLSSYFRRN LPNVKTQALV SHIANIDVTL TPSETDALIL ENDYIKQYMP RYNVLLRDDK SYPYIFLSGH RHPRLAYHRG PQREKGHYFG PYPNGGAVRE SLHLMQKLFP IRQCDDLYYK ARSRPCLQYQ IARCSAPCVG KISDEDYAEQ VKLASLFLRG KDQQVIATLV GKMEQAAMDL NYEDAARYRD QISALRRVAE QQEVSSDSGD MDVIGAYYAS GIACFHLLFI RNGKIFGSRS YYPSVPDETE VSEVLRAFML QFYLNVDSQR TLPREIVVSH EFEDIHELEE AIAQASNRRL LIKTKVRSER ASFLRIADAN AKNAVETRLS HQNTVEERFL LLEEALEQSQ AINRMECFDI SHTMGESTVA SCVVFNREGP SKGEYRRYNI SGITPGDDYA AMKQAIGRRF DKIEADGKIP DILFIDGGMG QLRIAQKVVN EKFAHLDVAP TLIGVAKGEG RKPGLETLIY GENEVAFSLP ADSGALHLIQ HIRDESHRFA ITGHRNKRQK TRNTSTLESI PGVGPKRRKA LLQYLGGLQQ VKGASVAQLS KVPGISLEMA QTIHDALRG
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