| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1823 |
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| Symbol | |
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| ID | 4922602 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2097828 |
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| End bp | 2098997 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640163388 |
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| Product | putative AcnD-accessory protein PrpF |
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| Protein accession | YP_001093948 |
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| Protein GI | 127512751 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2828] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR02334] probable AcnD-accessory protein PrpF |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.458437 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACAGA TGAAAATTCC GGCAACCTAT ATGCGCGGTG GCACCAGCAA GGGTGTCTTT
TTTGCGTTAA AGGATCTGCC TTTAAATGCC CAGCAGCCGG GCCCGGCCCG AGATGCCTTA
TTGCTTCGGG TGATCGGCAG TCCAGATCCC TACGGCAAGC AGACAGACGG CATGGGCGGG
GCTACATCCA GCACCAGTAA GACGGTGATT CTGGACAAGA GTCAACGCGA TGATCATGAC
GTGGATTACC TCTTCGGTCA GGTGGCCATA GATAAGCCCT TCGTCGATTG GAGTGGTAAC
TGCGGTAACC TGACCGCGGC GGTGGGGGCC TTTGCCATCA CCCAGGGCTT GGTGGATAGC
GCTAAGATCC CTGACAACGG CATAGCCGTG GTGAAGATCT GGCAGGCCAA TATCAACAAG
ACCATCATCG CCCATGTGCC TATGGTGGAT GGTGAAGTGC AGGAGCTTGG GGATTTTGAG
CTCGACGGCG TGACCTTCCC GGCGGCAGAG GTGCTGGTGG AGTTTGTTGA CCCGGCCGAT
GGCGAGGGCG ACATGTTCCC TACGGGTAAT CTGGTCGATA AGCTGGAGGT GCCGGGCGAG
CCTGTCTTCG ATGCTACCTT TATCAATGCA GGGATCCCTA CTATCTTCCT CAAGGCGGAG
CAGCTGGGCT ACGAGGGGAC TGAACTGCAA GAGGCGATCA ACGGCGATGC CGCGGCGCTT
GAGCGCTTTG AAACCATACG CGCCCACGGC GCCCTGCAGA TGGGGCTGAT TCAGTCTCTC
GATGAGGCTG CAGGTCGTCA ACACACGCCC AAGATTGCGT TTGTCGCTCC GGCTAAGGCC
TATACCTCTT CTAGCGGTAA GCAGATCGCA GCCGAGGAGA TAGACCTGCA TGTGCGTGCG
CTGTCTATGG GCAAGCTGCA TCACGCCATG ATGGGAACGG CGGCGGTGGC CATAGGTACG
GCGGCATCGA TCCCTGGCAC CTTAGTTAAT CAGGCGGCCG GCGGGCAGGC CCGTGAGAGC
GTGCGTTTTG GTCATCCCTC TGGCACCCTC AAGGTGGGCG CCAAGGCGAG CGAGCAAGAG
GGTCGCTGGC AGGTCGAAAA AGTCAGCATG AGCCGCAGTG CTCGCGTGCT GATGCAAGGC
TGGGTCTGTG TGCCCGAATC CTTGGGTTAA
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| Protein sequence | MKQMKIPATY MRGGTSKGVF FALKDLPLNA QQPGPARDAL LLRVIGSPDP YGKQTDGMGG
ATSSTSKTVI LDKSQRDDHD VDYLFGQVAI DKPFVDWSGN CGNLTAAVGA FAITQGLVDS
AKIPDNGIAV VKIWQANINK TIIAHVPMVD GEVQELGDFE LDGVTFPAAE VLVEFVDPAD
GEGDMFPTGN LVDKLEVPGE PVFDATFINA GIPTIFLKAE QLGYEGTELQ EAINGDAAAL
ERFETIRAHG ALQMGLIQSL DEAAGRQHTP KIAFVAPAKA YTSSSGKQIA AEEIDLHVRA
LSMGKLHHAM MGTAAVAIGT AASIPGTLVN QAAGGQARES VRFGHPSGTL KVGAKASEQE
GRWQVEKVSM SRSARVLMQG WVCVPESLG
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