| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1820 |
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| Symbol | prpB |
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| ID | 4924372 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2092990 |
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| End bp | 2093868 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640163385 |
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| Product | 2-methylisocitrate lyase |
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| Protein accession | YP_001093945 |
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| Protein GI | 127512748 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
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| TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCAG GAAAGAAATT CCGTCAGGCC TTGGCCGACA ACAAGCCATT GCAGATCGTC
GGTACCATTA ACGCCTACAC GGCCATGATG GCCAAGCAGA TCGGTCACAA GGCGATCTAT
CTCTCTGGTG GCGGGGTAGC CAACGCCTCT TATGGTCTGC CGGATCTGGG GATGACCTCA
CTAAACGATG TGATCGTCGA CGTGCAGCGC ATCACCTCTG CCTGTGATCT GCCGCTGCTG
GTGGATATAG ATACAGGTTG GGGCGGGGCA TTTAACATCG CCAAGACCAT CAAAGATATG
GAAAAGGCGG GTGCCGCGGC CGTGCACATG GAAGACCAGG TCGCTCAGAA GCGTTGTGGT
CACCGTCCTA ACAAGGAGAT CGTCTCGGTT GAGGAGATGG TGGATCGTAT CAAGGCGGCG
GTCGATGCGC GCACGGATCC TGACTTCTTC ATCATGGCCC GTACCGATGC CTTCGCTCAG
GAAGGACTGG AAGCTGCCAT CGAACGTGCC AAGGCCTATG TGGCTGCTGG CGCCGATGGC
ATCTTCGCCG AGGCGGTGAA GACAGAAGAG CATTATCGTG CATTCGCCGA AGCCCTAGAT
GTGCCTATTC TGGCCAACAT CACAGAGTTT GGTCAGACAG AGCTGTGGAA TCGCGAGCAG
CTGGGTCAGT GGGGCGCAGC CATGGTGCTC TATCCATTGA GTGCCTTCAG AGCCATGAAT
AAGGCGGCAG AGAATGTATA TCAAACCATT CTGCGCGATG GCGACCAGAA GGCGGTACTC
GATACTATGC AGACCCGCAT GGAGCTCTAT GACTATCTCG GTTATCACGC CTACGAGCAG
AAGCTCGACA GCCTGTTTGC CGAAGGTAAG AACAAGTAA
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| Protein sequence | MSAGKKFRQA LADNKPLQIV GTINAYTAMM AKQIGHKAIY LSGGGVANAS YGLPDLGMTS
LNDVIVDVQR ITSACDLPLL VDIDTGWGGA FNIAKTIKDM EKAGAAAVHM EDQVAQKRCG
HRPNKEIVSV EEMVDRIKAA VDARTDPDFF IMARTDAFAQ EGLEAAIERA KAYVAAGADG
IFAEAVKTEE HYRAFAEALD VPILANITEF GQTELWNREQ LGQWGAAMVL YPLSAFRAMN
KAAENVYQTI LRDGDQKAVL DTMQTRMELY DYLGYHAYEQ KLDSLFAEGK NK
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