| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1819 |
|---|
| Symbol | |
|---|
| ID | 4924371 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2092309 |
|---|
| End bp | 2092977 |
|---|
| Gene Length | 669 bp |
|---|
| Protein Length | 222 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640163384 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_001093944 |
|---|
| Protein GI | 127512747 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1802] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.418734 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCGAT ATAGCCAAAC CCCCGTGACA ACGGCAGATA AAACCTTTTA TCAACTCAGG
CAAGACATTG TCGAAGGGGT AATTGCTGCG GGTGCTAAGT TAAGTGAGAC AGAATTGTCG
ACAACTTATG GTGTCAGCCG CGCCGTGATC CGCGAGGCGA TCAATCGTCT CGAGTCTTGT
CATATCGTCG AGCGTCGTGC CAACGTGGGC GCTAGAGTGG TGGCGCTCAG TGAAGAGGGG
CTGCTGGCCC TGTATGAGAT CCGCGAGTCT CTCGAAGGTA TGGCCGCGCG ACTGGCGGCG
AAGAACATGA GCGATGAAGA GGTAGCGGAG CTCGAAGCCC TGCTGGTCAG CCATTTTCAA
GACGTCAAAC AGGGTGAATC CTATTACCAA GAGGCCGGCG ATGTGGACTT TCATTATCGC
ATCATATTGG GCAGCAAGAA TAAGCACCTT ATCTCTATGT TGTTCGACGG CATCTATCAT
CTGGTGCGTA TGTACCGCGT TCAGCTTGGC ATGGCGGGGC CTAGAGTCAC CACGGCCTAT
GACGAACACA GGCATATAGT GCAGGCCATC GCCAATCGCG ATCAGGAGCT GGCCGAGATG
CTAATGCGCA GACATATCAC CTATTCAAGA AACAACATCA GAAACAAACT CTCATCAATT
CAGTCATAA
|
|---|
| Protein sequence | MTRYSQTPVT TADKTFYQLR QDIVEGVIAA GAKLSETELS TTYGVSRAVI REAINRLESC
HIVERRANVG ARVVALSEEG LLALYEIRES LEGMAARLAA KNMSDEEVAE LEALLVSHFQ
DVKQGESYYQ EAGDVDFHYR IILGSKNKHL ISMLFDGIYH LVRMYRVQLG MAGPRVTTAY
DEHRHIVQAI ANRDQELAEM LMRRHITYSR NNIRNKLSSI QS
|
|---|
| |