| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1811 |
|---|
| Symbol | |
|---|
| ID | 4924384 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2080969 |
|---|
| End bp | 2081502 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640163372 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001093936 |
|---|
| Protein GI | 127512739 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000237995 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTATTAA TGCCACAAAG GGATTGGCAA TGGATATATA ACGATTCGTA TGGGGTTTTA
AGCGTTTCGT TAGGTTCGGA TATGGAATTT CTGACTCCCT ATAAAACGAA AGCACTTATT
CCTGATGCCC TGGCCACCAC GGAATTTAAT GTCGAGCACG CCAAATTCTA TATAGAGTTT
ATTGAGCGTA TCGGTAAGTC ATTAAATATA GCCGACGCGG TAAGGGTACA GCTGGCGCTT
AACGCCACGG CGGCCCATTT TCTATTAAAA CCTCAGATGC CTAAGTCGTG GTTTTTTGAA
ACATCTGCCG TCTGTGTATA CAGTGAACTG GGCAAGGTGT TCCAGTTGAA ATGCCAAGGT
GAGGTGGTGC AGGTACTGGT GGTCGAGTCT AACATTCAGG CATCCCTGGT TATGTTGTTA
TCGCCTGAAT TGCATTTGAG CGACAGTAAG GCGATGCGCC AATTCGATTG CATTAAGGTG
ATGAACGATA GATTGCATCC GCTAAAGGCC AATCGTCAGA TAGCCGCGGC TTAA
|
|---|
| Protein sequence | MLLMPQRDWQ WIYNDSYGVL SVSLGSDMEF LTPYKTKALI PDALATTEFN VEHAKFYIEF
IERIGKSLNI ADAVRVQLAL NATAAHFLLK PQMPKSWFFE TSAVCVYSEL GKVFQLKCQG
EVVQVLVVES NIQASLVMLL SPELHLSDSK AMRQFDCIKV MNDRLHPLKA NRQIAAA
|
|---|
| |