Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1801 |
Symbol | |
ID | 4924294 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 2061621 |
End bp | 2062268 |
Gene Length | 648 bp |
Protein Length | 215 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640163362 |
Product | putative solute/DNA competence effector |
Protein accession | YP_001093926 |
Protein GI | 127512729 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3109] Activator of osmoprotectant transporter ProP |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00925744 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGGAAT CAACAGAAAA GTTGACCGAC ACCAACGCAA TTCTTGCGTA TTTATATGAA ACATTTCCTT TATGCTTTAT CGCTGAAGGT GAAACTAAGC CTCTAAAAAT AGGATTGTTT CAAGACTTGG CTGAAAGGTT AGCTGATGAT TCTAAAGTCA GTAAAACGCA ATTAAGAATC GCCTTACGCC GTTACACCAG TAGCTGGCGT TACCTGAAAG GGGTTAAGGC TGGGGCACAG CGTGTCGATC TCGACGGCAA CGAGTGTGGC GAACTGGAAC AAGAGCATAT CGACCATGCA CAGGCTACAC TGAAGGAGAG CCAAGAGAAG GCTAAGGCAA AGCGTGCGGC GAAAGCGGCA GCAGAGAAGA CAGACAAGTC TGGTCCTAAG CCTGAGAAGA AAGCCTTCAA GAAGCCACTG CCTAAGCGTA GTAGCAAACC AGCGTCTAAA GCGGCTAAGC CACAGGTTGA GGCAAAGGAT TTAAGCCCGG CAACACTGAC TGAGTTGAAA CCAAATCAAC GCGTGAGTGT CAAACTAGGT AAATCGCCTG TTGCAGGTGT TGTCCTGGAC ATCAAGAAAG AAGATGTTCA AGTGCAGTTA GATTCAGGAT TAACGGTAAA AGTACCTGTA GAGCATATCC TGTTATAA
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Protein sequence | MMESTEKLTD TNAILAYLYE TFPLCFIAEG ETKPLKIGLF QDLAERLADD SKVSKTQLRI ALRRYTSSWR YLKGVKAGAQ RVDLDGNECG ELEQEHIDHA QATLKESQEK AKAKRAAKAA AEKTDKSGPK PEKKAFKKPL PKRSSKPASK AAKPQVEAKD LSPATLTELK PNQRVSVKLG KSPVAGVVLD IKKEDVQVQL DSGLTVKVPV EHILL
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