| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1801 |
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| Symbol | |
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| ID | 4924294 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2061621 |
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| End bp | 2062268 |
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| Gene Length | 648 bp |
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| Protein Length | 215 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640163362 |
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| Product | putative solute/DNA competence effector |
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| Protein accession | YP_001093926 |
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| Protein GI | 127512729 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3109] Activator of osmoprotectant transporter ProP |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00925744 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGGAAT CAACAGAAAA GTTGACCGAC ACCAACGCAA TTCTTGCGTA TTTATATGAA
ACATTTCCTT TATGCTTTAT CGCTGAAGGT GAAACTAAGC CTCTAAAAAT AGGATTGTTT
CAAGACTTGG CTGAAAGGTT AGCTGATGAT TCTAAAGTCA GTAAAACGCA ATTAAGAATC
GCCTTACGCC GTTACACCAG TAGCTGGCGT TACCTGAAAG GGGTTAAGGC TGGGGCACAG
CGTGTCGATC TCGACGGCAA CGAGTGTGGC GAACTGGAAC AAGAGCATAT CGACCATGCA
CAGGCTACAC TGAAGGAGAG CCAAGAGAAG GCTAAGGCAA AGCGTGCGGC GAAAGCGGCA
GCAGAGAAGA CAGACAAGTC TGGTCCTAAG CCTGAGAAGA AAGCCTTCAA GAAGCCACTG
CCTAAGCGTA GTAGCAAACC AGCGTCTAAA GCGGCTAAGC CACAGGTTGA GGCAAAGGAT
TTAAGCCCGG CAACACTGAC TGAGTTGAAA CCAAATCAAC GCGTGAGTGT CAAACTAGGT
AAATCGCCTG TTGCAGGTGT TGTCCTGGAC ATCAAGAAAG AAGATGTTCA AGTGCAGTTA
GATTCAGGAT TAACGGTAAA AGTACCTGTA GAGCATATCC TGTTATAA
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| Protein sequence | MMESTEKLTD TNAILAYLYE TFPLCFIAEG ETKPLKIGLF QDLAERLADD SKVSKTQLRI
ALRRYTSSWR YLKGVKAGAQ RVDLDGNECG ELEQEHIDHA QATLKESQEK AKAKRAAKAA
AEKTDKSGPK PEKKAFKKPL PKRSSKPASK AAKPQVEAKD LSPATLTELK PNQRVSVKLG
KSPVAGVVLD IKKEDVQVQL DSGLTVKVPV EHILL
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