| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1796 |
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| Symbol | |
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| ID | 4924390 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2056472 |
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| End bp | 2059096 |
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| Gene Length | 2625 bp |
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| Protein Length | 874 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640163357 |
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| Product | hypothetical protein |
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| Protein accession | YP_001093921 |
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| Protein GI | 127512724 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3008] Paraquat-inducible protein B |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.738799 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACAAA TTGAAACACC AAAAGTCGTT AAGAAAAAAC TCTTCTCTCC CATCTGGCTA
CTTCCCCTGA TCGCCCTGGC ACTCGGTGCC TGGCTGGGCA TCAAGAGTAT TCGCGAATCC
GGCGTCGAGG TGCGCATTCA TTTCCCCAGC GCCACGGGGA TCGACGTGGG TAAGACGCTG
GTCAGATACC AGGGCCTCAC CGTGGGTAAG GTGGTTGATA TCAGTATCGA CGACCAGCTT
CAGGGCGTAT ACGTAGATCT GCTGATGGAC TACCGCTCGA CGCCCTTCCT ACGCGATGAG
ACCAAGTTTT GGCTGGTGAC ACCTAAGGCT TCGATCACCG GCGTCGAGGG ACTGGACGCC
CTCTTCTCGG GCAACTATAT TGCCATTCAG CCAGGCGAAG GGGACTACAA GAACGAATTT
ACCGCCGAAG ATCAGGCCCC GCCCGTGGCG CCGGGCTCAG ACGGCTTGAT GATAGAGCTC
ACCAGCGCAT CCCTCGGCTC ATTAGATGTG GGCTCTCAGG TGTTTTACCG TCAGATCCCG
GTCGGCAAAA TCGTCAGCTA CCGCCTGGTG AACGACGACA GCATCCTCTT CAATGCCTAC
ATAGAGAAGA AATATTCCCA TCTGGTGAAA CAAGACTCGC GCTTCTGGAA CGTCTCGGGC
CTGGCGCTGG ACGCCTCGCT CTCAGGCATC AAGGTCAAGA CTGAGAGCCT GTCGGCCATC
CTCGCCGGCG GTGTTAGCTT CTCATCCCAG GGCAGCAGCG AACAAGCCAG CGTCAATCAG
ACCTTCACCA TCTTCGAAGA TAAGGAACAT GCCCTCGGTG GCATCACCTT TAGCCTAACG
GCCAACGATG CCGATAGCCT GAGCACGGGT GCCGACATCG TCTATCGCGG CATCAGTATC
GGCCAGATCA CCCAGACTCA CCTGACTGAA GCGGGCGTTA GCTTCGATGC CAGCATCGCC
ACCCAATATG CCGAGCTGTT AGGCAAAGAC AGCCAATTCT GGCTCGAAGG CGCGGATCTT
TCCCTCAGTG GCATCAAGCA TGCCAGCCGA TTGGTAACCG GCAATGTCGT CGCCTTCCTA
CCCGGCAGCG GCGAGCACCA GACCAGCTAT CCGCTGCTGG CTAAGGCGCC ACAACACTCA
CAAACGCCGC TCATGCTCAG CCTAAGCGCC GAAGAGAATC CGGGGATCAG CGCCGGCGCC
GAGGTGCGCT TTAAGCAGCT GCCCATAGGT CAGGTAGATA GCGTCGAGTT TAAGCCTGAC
TATTCGGGTC TTGCCTACCG CATCCAGATC TGGCCAGAGT TTGCCAAGCT TATCCATCAG
GGGAGCTACT TCGTTGCCGA ATCAGCCCTG GCCATCGATG CGTCGCTTGA CGGCGTGAGC
GTAAACACCA GGGATCTGAC CACACTCACC AAGGGCGCCA TCAGTCTGGT GCAGGGTCGC
AGCAAGAGGA CCGCTAATCC TAGCCAATCG CTGCCGCTGT TTGCCAACAC CAAGCAGGCC
GAAGGCGATC TCGCCAAGCA GAATCGTCTC AAGATAGTGC TTAGCAGCCC AGATGGTGCC
GGTCTCGCCG CCCACTCCCC CATCTACTAT AAGAAGATGC AGATTGGCGA GGTGCAGGGA
GTCAACTGGC GCGCCAGCAG CGAAGACTTT GCTATCGAGC TGGGTATCGA CAAGCAGTTC
GCCTCTCTGG TTAAGCCAAG CACCATCTTC TGGCGTAACG GCGCGCTGAG CGTCGATGCC
AGCCTCAATG GCGTCAAGGT AGACGTGGCG CCACTGGAAG GCGCATTAAA GGGCAGCGTC
TCCCTTGGAC TGCTGGAACA AGATGATATC GGCAATCAGA GCCACCTTTA TGGCTCAGAG
ACCTTGGCCC GCGCCAAGGC AACTCCCATT AGCATAGAGT TCGATGCCAG CACCCGCCTG
AGCAGTCACG CACCTATCCG CTATCAGGGG CACCAAATTG GCGAAGTGGA GCGGGTCAAG
CTGTCGCAGG ACTTACGCAG CGTCAACGTG GATGCCTACC TCTATGGCGA CTATGCCGTG
CCATTCCTGG CCGACGACGC CCAATATTTT ATCGTCGATG CCAACATCTC GCTTTCCGGC
GTCACCGCCG CCGAAACCCT GATAACCGGC CCCTATGTGT CTGTGCTACC GGGCCAGAGT
GGCAATCAGG TGCATGACTT TATGGGCAGC GTCGAATCGC CCACCCTGCT GAATCAAGAT
GCCCTCACCT TCACCCTGGT GGATGACAAC CTGGGCTCGG TCAAGATAGG CACGCCTATC
ATCTTCCGCG GCATTAAGAT TGGCGAAGTC AAACAGGTGC AACTCTCGAC CACGGGCACT
CAGGTAGAGA TAACGGCGCA GATTGCCAAG GGCTATAGCC ACCTGGTCAA CCAGAGCAGT
CAGTTCTGGG ATCTCTCCGG CATCAAGGTC GATGTCGGCC TCTTCTCCGG CGCGCAGATA
GAAACCGGCT CCCTTGAGAC CATTATCGCC GGTGGTATTG GCGTGGCGAC TCAATCCCCC
ACCACAGCCA ATAACCGTAT CGGCCAGGAT CAGGTCTTTA GTCTGCAGAG CAAACTGGAT
CCTAATTGGC TAAAATGGGC GCCAAATCAA CAAAGTCTTA ATTAA
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| Protein sequence | MTQIETPKVV KKKLFSPIWL LPLIALALGA WLGIKSIRES GVEVRIHFPS ATGIDVGKTL
VRYQGLTVGK VVDISIDDQL QGVYVDLLMD YRSTPFLRDE TKFWLVTPKA SITGVEGLDA
LFSGNYIAIQ PGEGDYKNEF TAEDQAPPVA PGSDGLMIEL TSASLGSLDV GSQVFYRQIP
VGKIVSYRLV NDDSILFNAY IEKKYSHLVK QDSRFWNVSG LALDASLSGI KVKTESLSAI
LAGGVSFSSQ GSSEQASVNQ TFTIFEDKEH ALGGITFSLT ANDADSLSTG ADIVYRGISI
GQITQTHLTE AGVSFDASIA TQYAELLGKD SQFWLEGADL SLSGIKHASR LVTGNVVAFL
PGSGEHQTSY PLLAKAPQHS QTPLMLSLSA EENPGISAGA EVRFKQLPIG QVDSVEFKPD
YSGLAYRIQI WPEFAKLIHQ GSYFVAESAL AIDASLDGVS VNTRDLTTLT KGAISLVQGR
SKRTANPSQS LPLFANTKQA EGDLAKQNRL KIVLSSPDGA GLAAHSPIYY KKMQIGEVQG
VNWRASSEDF AIELGIDKQF ASLVKPSTIF WRNGALSVDA SLNGVKVDVA PLEGALKGSV
SLGLLEQDDI GNQSHLYGSE TLARAKATPI SIEFDASTRL SSHAPIRYQG HQIGEVERVK
LSQDLRSVNV DAYLYGDYAV PFLADDAQYF IVDANISLSG VTAAETLITG PYVSVLPGQS
GNQVHDFMGS VESPTLLNQD ALTFTLVDDN LGSVKIGTPI IFRGIKIGEV KQVQLSTTGT
QVEITAQIAK GYSHLVNQSS QFWDLSGIKV DVGLFSGAQI ETGSLETIIA GGIGVATQSP
TTANNRIGQD QVFSLQSKLD PNWLKWAPNQ QSLN
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