Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1795 |
Symbol | |
ID | 4924319 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 2055296 |
End bp | 2056315 |
Gene Length | 1020 bp |
Protein Length | 339 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640163356 |
Product | diguanylate cyclase |
Protein accession | YP_001093920 |
Protein GI | 127512723 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAAAG ATTTGCTGCG CGAAGCCGCA ATCAATCTCA AGAGAGCCGT CCCCTTGATG TTAAAGCATC AGATCCCGAC GACCCCCACC AACTATGCCC TCTGGTACGC CTACGTAGGT CAGCAAAATC CAGAACTCAT CACCAAGATG GACAGAATAG TCAATGAGTA CAACACCTGT CCGCCGGTCA CCGCCGAGCT GCTCTACCGC GAACATATTG CCGATCCCAG CGAGGTCAAT GTGCTTAACA TGCGCCAGAA TCTCGAGGCC ATGACCATAG AGCTGTCGCA ATCGATCAAG GATACCAATC AGGACGCCAC CGTCTTTCAA CAGCGGGTGG ACAGTAACTT CAATCGCCTC AATCGCATCG AGGAGGAGGG GCTGAGCCTG GAGAAGGTAT TGGGGCTGGT GCGGGATCTG GTGAAGGAGT CAGACGATAT TCGTCAGAGT ACCGAATATT TTACTGGCCG TCTCGACAAG GCCCAGGAAG AGATAGCCGC GCTGAGAGAG GCGCTGAAAC GCTCAGAGCA AGACGTCTAT CATGACGCCC TCACAGGTGC CCTCAACCGA CGCGCCTTCG ACCAAGATCT CAAGGGGCTG CTGGCTCAAT CTCCCGAAGG TACCTGCCTA ATCTTGGCCG ATGTGGATCA TTTCAAGAGT TTTAACGACA CCTATGGCCA CCATCTCGGC GACAATGTGT TAAAGGCAGT AGCCAAACGC CTCAACGAAT CTTGCCGCGA CGGGGTCAAG CTCTACCGCT ATGGCGGCGA AGAGTTTGCC TTAATCGTGC CAAACAGCCA CCAACGCAAG GCGCGCCATC TGGCCGACGC CATGCGCCGC ACACTTGAAA AGATCTCCCT CAAGGACAGA CGCAAGAATC AGACGATCGA TAAGATCAGC GCCTCGTTTG GGGTGAGCGA GTGGCAGGCG AAAGACACCT TCGAGTCACT CATCGAGCGC ACAGACGGCT TTCTCTACGA TGCCAAACGC CTGGGCCGAA ATCGGGTGAT GCCGCTCTGA
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Protein sequence | MSKDLLREAA INLKRAVPLM LKHQIPTTPT NYALWYAYVG QQNPELITKM DRIVNEYNTC PPVTAELLYR EHIADPSEVN VLNMRQNLEA MTIELSQSIK DTNQDATVFQ QRVDSNFNRL NRIEEEGLSL EKVLGLVRDL VKESDDIRQS TEYFTGRLDK AQEEIAALRE ALKRSEQDVY HDALTGALNR RAFDQDLKGL LAQSPEGTCL ILADVDHFKS FNDTYGHHLG DNVLKAVAKR LNESCRDGVK LYRYGGEEFA LIVPNSHQRK ARHLADAMRR TLEKISLKDR RKNQTIDKIS ASFGVSEWQA KDTFESLIER TDGFLYDAKR LGRNRVMPL
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