| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1793 |
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| Symbol | |
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| ID | 4924305 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2052078 |
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| End bp | 2054408 |
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| Gene Length | 2331 bp |
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| Protein Length | 776 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640163354 |
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| Product | vault protein inter-alpha-trypsin subunit |
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| Protein accession | YP_001093918 |
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| Protein GI | 127512721 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2304] Uncharacterized protein containing a von Willebrand factor type A (vWA) domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.216106 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGCCAC GCCCGCGTCT CAGGATGAAC CAGACCGACC TTTGCCCCCC GAGGGGGGCG
CTTTTTTCTC GCCAGCGTCT GGTGATCGCC GCCTTGGTGT TCAGCGTCAG CGCAATTGGC
TCGACGACGC CGGCCTTCGG GCGCATGGGT CAACCGGCCG GCGTCAATGT GACGGCTGCC
AAATATGGTG AGCAGCTGCA CCATTTCGAT CTGCCCGCCG CCGATGAGCC CACCTTAGGC
CAGGGTGTGC TCGAGTATCG CTTAGATGGC GTTCAGCTAA CTAGCGAGTT GCCTGCTACG
GCGCTTGCCG TGGATACCCA GGTGCAGATG AACATCTCTG GTTGGATCAA CCGGGTGTCG
GTAAAGCAGG TGTTTGTGAA CGACAGCGAG CATTGGCTCA ATGGCCGCTA TCAATTTCCG
CTGCCTCATG ATGCGGCGGT AGACAGCCTC AAGCTGCATA TCGGCCAGCG GGTGATAATC
GGTGAGATCC AACCTAAGGC TGTGGCGAGG CAAACCTTCG AACAGGCCAA GGCCAGCGGC
AAGAAGGCCA GCCTGGTGAG TCAGCAAAGA CCCAACATCT TCACCTCAGA GGTGGCGAAC
CTGGGCCCGG GCGAGGCACT GGTGGTGGAG ATCGCCTATC AGCAGCAGGT GCGTTATCAA
GATGGCGAGT TCAGCCTGCG CTTTCCAACG GCTATCACCC CGAGATATTT TCCCAAGGGG
CAGGTTCCAG ACTTAGAACA AGCATCAGTT AACGATATAC AAGGACTTAA CGTCCTGAAT
GAGAGCACGC AGAGTGACGA GCAGAAGCTC TATCTGGATG TGGTACTGGA TGCTGGCATG
GCCATCAGCC GACTGGAGAC CCCCTATCAT CAGATGCGCC AGACCCAGCT TGGCGGCACT
AAGATAGGGC TCAATCTCAC AGCCAACCTG CGACCCGATC GCGACTTTCT GCTTAAATGG
CGCCCGCTGC TTGCCGAGCA GCCAAGCGCC GTGATGTTTG CTCAGCTAGG CAAGACACAT
GAGTTCAAGA CTCATGAATT CAAGAATGAA GAATCTCTTG CATCTTCACA GGCTCACAAT
GATCAGGTGG TGAGCGAAGC GAATCACCCA GCCGAGGCGC AAGCGAGTGA TAAAGAGGCG
AAGGACAGCT ACGCCCTGGT GATGCTGATG CCTCCCCAGG ACAAGGCGAG GGTGCGCCTG
CCAAGAGAGC TTACACTGGT GATAGACACC TCGGGCTCAA TGACGGGAGA TTCGATCGCC
CAGGCCAAGT CGGCCATCTT AAACGCCTTA GCCGGTCTTG GCAGCCAGGA TACCTTCAAT
GTGATCGCCT TTGACAGCAG CGTGCGCAGC CTGTCACCGG TGGCCTTGTC AGCCACTGCG
GCCAATTTGG GCAAGGCCAA TCTGTTCGTG CAGAGCCTGG AGGCCGATGG CGGCACAGAG
ATGGCCCCGG CGCTGCTGCG GGCCTTGAGT CAGCCAGAAT CTGGCGTGTC GTCCATCTCA
TCGGCCGTAA AACCTGAGCG TTTGAAGCAG GTGGTATTTA TCACAGACGG CGCCGTGGGC
AACGAGGCCT CACTGTTTGC GCTGATCGCC GCCAATATCG GCCGCCAGCG GCTGTTTACC
GTGGGCATAG GTGCTGCGCC TAACGGCTAC TTTATGGAGC GCGCGGCCAG GGCGGGACGG
GGCACTTACA CCTATGTGGG CAAGATAAGC GAGGTGGATG CCAAGATAGG TGAGCTGTTG
GAGAAGATTG AATCGCCGCA GATCAGCGAT GTAACCCTGA CCTTAGATGA TGGCTCGATT
CCCGATTACT GGCCGGTGCA GATAGGCGAT CTCTATGCCC ATGAGCCGAT CATGGTGGCA
CTGAGACTCA CGCCCGCACA GAGATCGCGC AGCGATGCCC TGATCATTTC GGGCGATCTC
GATGGCAAGA ACTGGCAACG TCGCCTGGCC TTGACGGGGG GCGATAAGCC CAGGGGGATA
GATCTTATTT GGGCGCGAAA TCAGATAGCG AGCCTGCAGC TAAGTAAAAA CGCCAAGAAT
CAGGCGGCGA TAAAAGAGAG CGTGACCCGA TTGGCGATGG ATTATCACCT GGTCAGCCCC
TATACCAGCC TGGTGGCTGT GGATAGAACG CCATCACGCC CCGAGGCTAT GGATGCCATG
GAACTGTTTA AACCGGCACC TATGCCGATG CAAAATCAGT GGCCGCAGAC CGCCACCGAG
AGTCGTCTCT ACTTGGCACT GGGCGCCATG ATGCTGCTGC TGATCGGCGC CTATTGGGTG
AGTTATCTGC CTTGTCTGCG CGGGCTTTGG CGCAGACGCT TGGAGGCCTG A
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| Protein sequence | MLPRPRLRMN QTDLCPPRGA LFSRQRLVIA ALVFSVSAIG STTPAFGRMG QPAGVNVTAA
KYGEQLHHFD LPAADEPTLG QGVLEYRLDG VQLTSELPAT ALAVDTQVQM NISGWINRVS
VKQVFVNDSE HWLNGRYQFP LPHDAAVDSL KLHIGQRVII GEIQPKAVAR QTFEQAKASG
KKASLVSQQR PNIFTSEVAN LGPGEALVVE IAYQQQVRYQ DGEFSLRFPT AITPRYFPKG
QVPDLEQASV NDIQGLNVLN ESTQSDEQKL YLDVVLDAGM AISRLETPYH QMRQTQLGGT
KIGLNLTANL RPDRDFLLKW RPLLAEQPSA VMFAQLGKTH EFKTHEFKNE ESLASSQAHN
DQVVSEANHP AEAQASDKEA KDSYALVMLM PPQDKARVRL PRELTLVIDT SGSMTGDSIA
QAKSAILNAL AGLGSQDTFN VIAFDSSVRS LSPVALSATA ANLGKANLFV QSLEADGGTE
MAPALLRALS QPESGVSSIS SAVKPERLKQ VVFITDGAVG NEASLFALIA ANIGRQRLFT
VGIGAAPNGY FMERAARAGR GTYTYVGKIS EVDAKIGELL EKIESPQISD VTLTLDDGSI
PDYWPVQIGD LYAHEPIMVA LRLTPAQRSR SDALIISGDL DGKNWQRRLA LTGGDKPRGI
DLIWARNQIA SLQLSKNAKN QAAIKESVTR LAMDYHLVSP YTSLVAVDRT PSRPEAMDAM
ELFKPAPMPM QNQWPQTATE SRLYLALGAM MLLLIGAYWV SYLPCLRGLW RRRLEA
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