| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1791 |
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| Symbol | |
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| ID | 4924302 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2050371 |
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| End bp | 2051063 |
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| Gene Length | 693 bp |
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| Protein Length | 230 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163352 |
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| Product | two component transcriptional regulator |
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| Protein accession | YP_001093916 |
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| Protein GI | 127512719 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000231936 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGCGTA TTGCAATAGT GGAAGATGAG GCGGCTATCC GCGAAAACTA CAAAGAGGTG
CTGCAGCAGC AAGGCTACTT TGTGCAGGCG TACGCCAACC GCCCCAGCGC CATGGAGGCC
TTCAACACGC GTCTGCCTGA CTTAGCGATC ATCGACATCG GCCTAGAAGA TGAGATAGAT
GGCGGCTTTA CCCTGTGCCA GTCACTCAGA GCCATGTCGA ACACCCTGCC TATCATCTTT
CTGACCGCCA GAGACAGTGA CTTCGACACC GTCTGCGGCT TGAGACTGGG CGCCGACGAC
TATCTGAGCA AAGATGTCAG CTTCCCCCAT CTGATCGCTC GCCTCGCCGC GCTATTTCGA
CGCTCGGACA TCCAAAATGG CGCCAATCCT CAAGATGGCA TGATAGAGCA CGGCAACCTG
ACCATAGATG TCAATCGTAT CCAGGTCTAC TGGAAACAGC AGCCTATTGA GCTGACGGTC
ACCGAATTTT GGATGGTACA CGCCCTGGCC AAACGCCCAG GCCATGTGCG TAGCCGTCAG
GCGCTGATGC AGGACGCCAA GATCTATGTG GATGACAGCA CCATCACCTC CCACGTGAAG
CGGATCCGTA AGAAATTTAT CAGCCAAGAC CCAGAATTCG ATTGTATCGA TACCGTCTAC
GGCATGGGCT ATCGCTGGGA TACCCAAGAC TAA
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| Protein sequence | MKRIAIVEDE AAIRENYKEV LQQQGYFVQA YANRPSAMEA FNTRLPDLAI IDIGLEDEID
GGFTLCQSLR AMSNTLPIIF LTARDSDFDT VCGLRLGADD YLSKDVSFPH LIARLAALFR
RSDIQNGANP QDGMIEHGNL TIDVNRIQVY WKQQPIELTV TEFWMVHALA KRPGHVRSRQ
ALMQDAKIYV DDSTITSHVK RIRKKFISQD PEFDCIDTVY GMGYRWDTQD
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