| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1789 |
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| Symbol | |
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| ID | 4924407 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2046906 |
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| End bp | 2048093 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640163350 |
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| Product | cystathionine beta-lyase |
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| Protein accession | YP_001093914 |
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| Protein GI | 127512717 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
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| TIGRFAM ID | [TIGR01324] cystathionine beta-lyase, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0834486 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAG AGACCAAGAT AGTCAGCGTC GGCCGCGACA AGAAATGGAG CAAGGGGGTG
ATCAACCCGC CGGTATTTCG CGCCTCCACA GTGGTGTTCG ACACCATAGA GGATATGCGT
CATGCCACCA AGAACCGCGC CAATGGCGCG ATGTTCTATG GTCGCCGCGG CACCCCAACC
CACTTTGCCT TCCAGGCGGC CATCGCCGAA CTCGAAGGCG GCGTAGGCAC CGCCCTCTAC
CCTTCAGGTT CGGCGGCCAT CTCAGGCGCC CTGCTCTCCT TCCTCAAGGC GGGCGATCAT
CTGCTGATGG TCGATACCGC CTATGAACCT ACTCGGGATC TGTGCGACAA GCTACTCAAG
GGCTTCGGCA TAGAGACCAC TTACTATGAT CCCCTCATAG GTGATGGCAT AGAGGCGCTT
ATCCGCCCCA ATACCAAGGT ACTGTTTCTC GAATCTCCCG GCTCCATCAC GCTAGAAGTG
CAGGACGTGC CGACCCTGAG CGCCATCGCC CATCGCCACA ATCTGGTGGT CATGCTGGAT
AACACTTGGG CCTCACCCAT CAACTGCCGC CCCTTCGAGC TTGGCGTGGA TATTTCGATC
CAGGCGGCGA CCAAATATAT CGTCGGTCAC TCGGATGTGA TGCTGGGAAC CGCCACCGCC
AACCAGGCTC ATTGGGACCA GCTCAGGGAA AATAGCTACC TCATGGGCCA ATGCACCTCG
GCGGACGATA TCTATCTCGC CAGTCGCGGC CTACGCACCC TGGGCGTGCG TATGGCGCAG
CATGAGAAGA ATGGCCTAGA GGTCGCCAAC TTGCTGGCCA CACGCCCAGA GGTGGATCAT
CTGCGCCACC CCGCCTTTGC CTCCTGCCCC GGACATGAGT TCTTCAAACG GGATTTCAGC
GCCTCCAACG GCCTCTTCTC CTTCGTGCTC AAACGCGGCA ACATCAAGGC GATCACCGCC
TTCGTCGAAG GCATGGACCA CTTCAAGATG GGCTTCTCCT GGGGTGGCTA CGAGAGCCTG
ATCCTGGGGG TCTTCGGTAT CGACAAACTG CGCACCGCCA CCCAGTGGGA CAGCAGCAAG
CCGCTGATCC GCCTGCATGT GGGCCTGGAA AATCCTGAAG ATCTCATCAA AGATCTCGAG
GCCGGCTTCG CCCGCTACAA CGCGGTATTG GATGGCCAGA GCGACTAG
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| Protein sequence | MKKETKIVSV GRDKKWSKGV INPPVFRAST VVFDTIEDMR HATKNRANGA MFYGRRGTPT
HFAFQAAIAE LEGGVGTALY PSGSAAISGA LLSFLKAGDH LLMVDTAYEP TRDLCDKLLK
GFGIETTYYD PLIGDGIEAL IRPNTKVLFL ESPGSITLEV QDVPTLSAIA HRHNLVVMLD
NTWASPINCR PFELGVDISI QAATKYIVGH SDVMLGTATA NQAHWDQLRE NSYLMGQCTS
ADDIYLASRG LRTLGVRMAQ HEKNGLEVAN LLATRPEVDH LRHPAFASCP GHEFFKRDFS
ASNGLFSFVL KRGNIKAITA FVEGMDHFKM GFSWGGYESL ILGVFGIDKL RTATQWDSSK
PLIRLHVGLE NPEDLIKDLE AGFARYNAVL DGQSD
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