Gene Shew_1788 details

Gene Information

• Locus tag: Shew_1788
• ID: 4921263
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella loihica PV-4
• Kingdom: Bacteria
• Replicon accession: NC_009092
• Strand: +
• Start bp: 2046229
• End bp: 2046726
• Gene Length: 498 bp
• Protein Length: 165 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 640163349
• Product: CreA family protein
• Protein accession: YP_001093913
• Protein GI: 127512716
• COG category: [S] Function unknown
• COG ID: [COG3045] Uncharacterized protein conserved in bacteria

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.804701
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 16
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAGATGA AAGCTTGGAT TGGAATCATG TTTGCCGCAG CAACAAGCCT GCTGGCGGGC 
TGCGGCGATG ATGTGGGCAA AGTGAGCCTG GGGGTCTTTA CCACCAAGGA TGTGATTATC 
GAGGCCAGGC AAGATCCTAA GATCCCCGGC GTGACCTGTC ATATCAGTCG TATCGAGGCG 
AATCTAGACT TTGCCGATCC GTCGGATATG GGGATCGCCT GTCGTCAGAC AGGGCCGATT 
TTGCCTGCGG ATCTCGCCAA TATCGACAAG AGCCACGGCG GCGAGGTGGT GTTTAAGGCT 
TCACTGAGTA TCTTGTTCAA ATCCCTCAAG GTGAGACGCA TCTATGACGT CGACAGCCAG 
ACGCTGATCT ATCTCTCATA CTCCACCAAG GAGACAGATG GCAGCCATAA GCACAGCCTG 
TCGACCGTGC CCCTGTACGG CACCCAGGCC TGGCAAGCGC CTGCGGCGCA AAACGGAGAG 
CCAGCGGCTA AGAACTGA 

 

Protein sequence

MKMKAWIGIM FAAATSLLAG CGDDVGKVSL GVFTTKDVII EARQDPKIPG VTCHISRIEA 
NLDFADPSDM GIACRQTGPI LPADLANIDK SHGGEVVFKA SLSILFKSLK VRRIYDVDSQ 
TLIYLSYSTK ETDGSHKHSL STVPLYGTQA WQAPAAQNGE PAAKN