| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1777 |
|---|
| Symbol | |
|---|
| ID | 4921442 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 2032466 |
|---|
| End bp | 2033689 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640163338 |
|---|
| Product | Bcr/CflA subfamily drug resistance transporter |
|---|
| Protein accession | YP_001093902 |
|---|
| Protein GI | 127512705 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0221977 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACAAAG CGTCGATCCC GTCATCTGAG CTTAGCCAAC CCCAGGGCAT CCCCAATCTG
GCCCTATTGA TCCCCATGTT ATCGGCCATC GTCGCCATCA CGCCGCTGGC GATCGACATG
TACCTGCCGG CCATGTCGAC CCTGGCCAGC AGCTTCAACT CCAGCGTCAC CACTGTGCAG
CAGTCCCTCA GTCTCTATCT GGCGGGCTAT GCCCTTGGCA TGCTCACCTT CGGCCCCATC
GCCGACCGCA TCGGCCGCCG CCCGCTAGTG CTGCTTGGTT TAACCGGCTT TGGTTTGATC
AGCCTGGCAC TGGCCTTCGT CACTAGCGTG GAGGTATTTC TGGGGCTGAG ATTTCTGCAG
GCCTTCATCG GCGCCGCCGC CACAGTGGTG GTGCCCGGCT ACATCAAGGA GGTCTATGGC
AAGAACACCG CCAAGGGGAT GTCCTATGTC AGCCTGATCA TGATGCTGGC GCCGCTCATC
GCCCCCACTA TGGGCAGTCT GATCCTCGAG CTGGGCGAGT GGCACCTTAT CTTCTTCATC
TTGGCCTGTT ACGCCAGTTT GCTGCTCGTT TTGGTTCTTA CCAAGCTAAG AATGCCAAGC
GACGCGCAAA CAAGCGGCCG CAGTCAGCGC TCCTTCTTCG GCGCCTACGC TGTGGTGTTT
ACCAAGCCTG GCGTTAAGCT GCATATCGCC AGCGGCGTGA TGACCTCGTT TGCCTTCTTC
TGCTACCTCA CCGCCTCGCC GTTCGTCTAC ATGGAGGTGT TTGGTCTGGA TAAGAGCTTG
TTTGCCATCC TCTTTAGTAC CAATGTCGGC GCCCTGATGC TGGCCAACGT GATCAACAGC
CGCATCGTAG TCAAGTATGG CTCTCGCCGC ATGCTAAAAG TGGCAACCCT GCTGGCGGCC
GTCGCCGGTA TCGGCTTATT AAGCGTTAAC CTATTTGGCC TTAGCTATCA CTTTACCGTG
GCGGCGCTCA TCCCCTTCAT GGGTTTCCTG GGCGTAATGT CGGTTAATGC CGACGCCATA
GTGCTGATGA AGTTTCAGCA AGAAACCGGC ACCGCGACGG CGGTGATCGG CACCCTGAGA
TTTGGCTTTG GCGCCCTGGC CGGCCCTCTG TTGGCGCTCT TCTACACAGG GACGGCGGTG
CCCTTCTCGG CGCTTATGTT AGGCGCCGTA CTGCTGGTTG GCCTATGCCA GTTCCTTGCG
CATTCACAGC AAAGGCAGGG CTAA
|
|---|
| Protein sequence | MNKASIPSSE LSQPQGIPNL ALLIPMLSAI VAITPLAIDM YLPAMSTLAS SFNSSVTTVQ
QSLSLYLAGY ALGMLTFGPI ADRIGRRPLV LLGLTGFGLI SLALAFVTSV EVFLGLRFLQ
AFIGAAATVV VPGYIKEVYG KNTAKGMSYV SLIMMLAPLI APTMGSLILE LGEWHLIFFI
LACYASLLLV LVLTKLRMPS DAQTSGRSQR SFFGAYAVVF TKPGVKLHIA SGVMTSFAFF
CYLTASPFVY MEVFGLDKSL FAILFSTNVG ALMLANVINS RIVVKYGSRR MLKVATLLAA
VAGIGLLSVN LFGLSYHFTV AALIPFMGFL GVMSVNADAI VLMKFQQETG TATAVIGTLR
FGFGALAGPL LALFYTGTAV PFSALMLGAV LLVGLCQFLA HSQQRQG
|
|---|
| |