| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1770 |
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| Symbol | |
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| ID | 4923747 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2024219 |
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| End bp | 2026714 |
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| Gene Length | 2496 bp |
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| Protein Length | 831 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640163331 |
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| Product | nitrate reductase catalytic subunit |
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| Protein accession | YP_001093895 |
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| Protein GI | 127512698 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR01706] periplasmic nitrate reductase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATGA ATCGACGCGA ATTTATGAAG GCAAATGCGG CCATGGCCGC TGCCTCAGTG
GCTGGTTTGG CCTTGCCTGC AACGGCAAGC AACCTAATTA CCAGTTCAGA GCAGACTAAA
CTTGAGTGGA ACAAGGCGCC ATGTCGTTTC TGCGGTACAG GTTGTTCGGT CATTGTCGCG
ACACGCGACG GCAAGGTGGT TGCGACTCAC GGCGACGCCG AGAGTGAGGT AAACCGTGGC
CTGAACTGTA TCAAGGGTTA CTTCCTGTCT AAGATCATGT ACGGCAAGGA CAGACTGCAG
AGCCCTATGC TGCGTATGAC CAACGGCAAA TACGACAAGC ATGGCGAGTT TACCCCAGTG
AGCTGGGACA CAGCCTTCGA TACCATGGCG GACAAGTGGA AAGCCACCAT CAAGAAGAAG
GGCCCTACCG CCATAGGTAT GTTCGGCTCA GGCCAGTGGA CAGTATGGGA AGGCTACGCC
GCCTCTAAAT TGATGAAGGC CGGTTTTGGC TCAAACAACA TCGACCCTAA CGCCCGTCAC
TGTATGGCGT CTGCGGTAGG TGGCTTCATG CGTACCTTCG GTATCGATGA GCCTATGGGT
TGTTACGATG ACATGGAAAA CGCCGATGCC TTCGTGCTCT GGGGTTCTAA CATGGCCGAG
ATGCACCCTA TCCTCTGGAG CCGTGTTACC GACCGTCGTC TTAGCGCGCC ACACGTTAAG
GTGTCTGTGC TATCGACCTT TACCCACAGA TCATTCGACC TGGCCGATCT CGGTATCGTC
TTCACGCCGC AGACAGACCT GGCTATTCTG AACTTTATCG GCAACTACAT CATTCAAAAC
GATGCGGTAA ACTGGGATTT CGTCAACAAG CACGTTAACT TCCGTAAGGG TGAAACCGAC
ATCGGCTACG GCCTGCGTCC AACCCATCCA CTGCAGCAGA AAGCCAAGAA CGTTAAGACC
GCCGGTAAGT CTACGCCGAT CGAATTTGAT GCCTTCAAGG CCTTCGTTGC CGACTATGAC
GTGGCCTCTG TCAGCAAGCT TTCTGGCGTG CCGGAAGATA AGCTGATTGA ACTGGCGAAA
CTCTACGCCG ATCCAAATAC CAAGGTGACC TCATTCTGGA CCATGGGCTT CAACCAACAT
ACCCGTGGTG TATGGTGTAA CAACCTGATT TATAACATTC ACCTGCTAAC AGGTAAGATC
TCGACGCCGG GTAACAGCCC ATTCTCGCTG ACCGGTCAAC CCTCTGCCTG TGGTACCGCC
CGTGAAGTGG GTACCTTCTC ACATCGTCTG CCTGCAGACC TAGTGGTGAA TAACCCAGAA
CACAGAAAGA TTGCCGAGAA GATCTGGAAG ATCCCAGATG GCATCATTCC ACCTAAGCCT
GGCTACCACG CGGTAGAGCA GAATCGTCGT CTGAAAGATG GTGATATCAA TGCCTACTGG
GTACAGGTAA ACAACAACAT GCAGGCCGGT CCTAACATCA ACGAGGAAGG TCTACCTGGC
TATCGTAACC CTGAAAACTT CATCGTGGTG TCTGACGCCT ACCCAACGGT AACTACACAG
GCCGCCGACC TTATTCTGCC AACCGCCATG TGGGTGGAGA AAGAGGGCGC CTATGGTAAC
GCCGAGCGTC GTACCCAGTT CTGGCATCAG ATGGTGAAGG CACCGGGCGA GTCTCGCTCA
GATCTTTGGC AGTTGATGGA GTTCTCTAAG CGTTTCACCA CAGACGAAGT CTGGCCAAAA
GAGGTGCTGG CGGCGAACCC TGAGTACAAG GGCAAGACGC TGTTCCAGGT ACTCTACCAG
AACGGTAACG TAGATAAGTT CCCACTGGAG CAGGCCGATC CTAAGTATAT GAACGATGAA
GCCAAGCACT TTGGTTACTA TGTTCAGAAG GGTCTGTTTG AAGAGTACGC TACTTTCGGT
CGCGGTCATG GCCATGACTT GGCTGACTTC GATACCTACC ATGAGGTGCA CGGTCTGCGC
TGGCCTGTGG TTAACGGTAA AGAGACCAAG TGGCGCTTCC GCGAAGGCAG CGATCCTTAT
GTGAAACCAG GTACAGGCTT CCAGTTCTAC GGTAAGCCAG ATGGTAAGGC GGTTATCTAC
GCTCTGCCAT ACGAGCCTGC CGCCGAGTCG CCAGATGAAG AGTTTAACCT TTGGTTATCG
ACCGGTCGTG TGCTGGAGCA CTGGCACTCA GGTTCTATGA CCCAGCGTGT GCCCGAGCTG
TACCGCGCCT TCCCGGATGC CGTGTGCTTC ATGCATCCAG AAGACGCTAA GAAACGCGGC
CTGCGTCGCG GTGATGAGGT GAAGGTGGTT TCTCGCCGTG GTGAGATCAA GACACGTGTC
GAGACCCGTG GCCGTAACAA GCCGCCTGTC GGTCTGGTCT TTGTGCCTTG GTTCGACGCC
AGCCAGCTGA TTAACAAGGT GACGCTAGAT GCGACGGATC CTTTGTCTAA ACAGACTGAC
TTTAAGAAGT GCGCAGTTAA AGTAGTTAAG GCATAA
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| Protein sequence | MKMNRREFMK ANAAMAAASV AGLALPATAS NLITSSEQTK LEWNKAPCRF CGTGCSVIVA
TRDGKVVATH GDAESEVNRG LNCIKGYFLS KIMYGKDRLQ SPMLRMTNGK YDKHGEFTPV
SWDTAFDTMA DKWKATIKKK GPTAIGMFGS GQWTVWEGYA ASKLMKAGFG SNNIDPNARH
CMASAVGGFM RTFGIDEPMG CYDDMENADA FVLWGSNMAE MHPILWSRVT DRRLSAPHVK
VSVLSTFTHR SFDLADLGIV FTPQTDLAIL NFIGNYIIQN DAVNWDFVNK HVNFRKGETD
IGYGLRPTHP LQQKAKNVKT AGKSTPIEFD AFKAFVADYD VASVSKLSGV PEDKLIELAK
LYADPNTKVT SFWTMGFNQH TRGVWCNNLI YNIHLLTGKI STPGNSPFSL TGQPSACGTA
REVGTFSHRL PADLVVNNPE HRKIAEKIWK IPDGIIPPKP GYHAVEQNRR LKDGDINAYW
VQVNNNMQAG PNINEEGLPG YRNPENFIVV SDAYPTVTTQ AADLILPTAM WVEKEGAYGN
AERRTQFWHQ MVKAPGESRS DLWQLMEFSK RFTTDEVWPK EVLAANPEYK GKTLFQVLYQ
NGNVDKFPLE QADPKYMNDE AKHFGYYVQK GLFEEYATFG RGHGHDLADF DTYHEVHGLR
WPVVNGKETK WRFREGSDPY VKPGTGFQFY GKPDGKAVIY ALPYEPAAES PDEEFNLWLS
TGRVLEHWHS GSMTQRVPEL YRAFPDAVCF MHPEDAKKRG LRRGDEVKVV SRRGEIKTRV
ETRGRNKPPV GLVFVPWFDA SQLINKVTLD ATDPLSKQTD FKKCAVKVVK A
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