| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1767 |
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| Symbol | |
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| ID | 4922036 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2019461 |
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| End bp | 2023348 |
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| Gene Length | 3888 bp |
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| Protein Length | 1295 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640163328 |
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| Product | ATP-dependent helicase HrpA |
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| Protein accession | YP_001093892 |
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| Protein GI | 127512695 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAATTCGC CACGTCACCC CCTGTCTCAT GCCTTTCTCA ACCAGTGTTT TCAGGCCGAT
GCCTCTCGCA TCAAGCGCCG CCTCCATAGA CTGAAAAAAC AAGCCGACGG CGAGCAGAAA
GATGAGGCGC TGGCCCAGTT AGAAGAGCAG GCCATTGCCG CCGCAGCTAA GGTGGAGAGC
CGTAGGCAGA ATCGCCCCGA GATCAGTTAT CCCGATGCCT TGCCCGTGTC GCAAAAGCGC
GGCGAGATAG CCGAGGCGAT CGCCAATAAC CAGGTGGTGA TTGTGGCCGG TGAGACAGGC
TCGGGTAAGA CGACCCAGCT GCCGAAGATC TGTCTCGAGC TTGGCCTGGG CACCCGCGGC
CTGATTGGCC ACACCCAGCC AAGACGACTG GCCGCCCGCA GCGTGGCGAC CCGTGTGGCC
GAAGAACTCA ATAGCCCACT GGGCGAAGTG GTAGGCTTTA AGGTGCGTTT CGCCGATGCC
ATCAAGCCGA CCTCTTACAT CAAGCTGATG ACTGACGGTA TCTTGCTGGC GGAGCTGAGT
TCAGACAAAT ACCTGGATCA GTACGACACC ATCATTATCG ATGAGGCCCA CGAGCGAAGC
CTGAATATCG ACTTCATCCT GGGTTACCTC AAGAGCGTGC TCAAGCGCCG TCCGGATCTC
AAGGTGATCA TCACCTCGGC CACCATAGAC GTGGAGAGAT TCTCTAAGCA TTTCAATAAT
GCGCCTGTTA TCGAGGTGTC GGGCCGTACC TATCCGGTGG AGACCCGCTA CCGTCCGCTA
GTCGGCGAGC AGGATGAAGA CTTAGATCTC ACCGACGGCA TCTTCGCCGC GGTGGAGGAG
CTGATGGCCG AGGGGCCGGG GGATATCCTG ATCTTCCTCA ACGGCGAACG TGAGATCCGC
GACCTGGCCG ACCAGCTCAA CAAACAGCAG TATCGCGATA CCGAGGTGTT ACCCCTGTAT
GCGCGTCTCT CCTATGGTGA GCAGTCCAAG GTATTTAAGA GTCATCGCGG ACGCCGTATC
GTGCTGGCCA CCAACGTGGC GGAAACTTCG TTGACGGTTC CCGGCATCAA GTATGTGATC
GACCCGGGCA CGGCGCGCAT CAGCCGTTAC AGCTATCGCA CTAAGGTGCA GCGCCTGCCG
ATCGAACCTA TCTCCCAGGC GAGCGCCAAC CAGCGTCAGG GCCGTTGTGG CCGCGTGGCG
CCGGGGATCT GTATTCGTCT CTATGATGAG GCGGACTTTA ACAACCGCCC CGAGTTTACC
GATCCCGAGA TCCTAAGGAC CAACCTGGCT TCTGTCATTT TGCAGATGCT CTCCATCGGC
CTTGGCGACA TCGAAGGTTT CCCCTTCATT CAGCCGCCCG ATGCCAGATA TATCCGTGAT
GGTTTCCTGC TGCTGGAAGA GCTGCAGTCG GTGCGTAAAC ACAAGGGCCA GCTGCAACTC
ACCCCGCTGG GCCGTCAATT GGCGAGTATC CCTGTGGATC CGCGCCTGGC GCGCATGGTG
GTGCAGGCCA AGGAATATGG CTGCCTGCAT GAGACACTGG TGATCACCGC GGGTCTTTCG
ATTCAAGATC CCCGCGAGCG CCCAATGGAT AAGAAGCAGG CCGCCGATGA GGCCCACAGA
CGCTTCAACG ACAAGGACTC TGACTTCATC GCCTGGGTCA AGCTGTGGGA TCACATCAAG
GAGCAGCAGA AAGCCCTGTC TGCCAGTCAG TTCCGTAAGC TGTGTAAGCA GGAGTTTCTC
GCCTATCTGC GGGTGCGTGA ATGGCAGGAT CTCTATACCC AGCTGCGACA GGCGGTGCAC
GACCTCAAGT GGAAGCTCAA CAGCGAGCCC GCCGACTATG AGCTGCTGCA TAAATCTTTG
CTGACCGGCC TGCTGAGCCA TATCGGTTTC AAGGATAAGG ACAACGAGTA TCTGGGGGCG
CGTAACCGCA AGTTCTTCGT CTTCCCCGGC TCGCCGCTGG CCAAGAAGGG ACCTAAGTGG
ATCATGGCCG CCGAGATGAC CGAGACCTCG CGACTGTTTG CCCGCTGCTG CGCCAAGATC
CAGCCTGAAT GGGTCGAGCC CCTGGCCGGC CATCTGGTGA AGAAAAGCTA TGTGGAGCCC
CATTTCGAGG CCAAGCAGGG CAGTGTGGTG GCGCTGGAGA ATCAGCAGCT CTACGGCCTG
ACCATAGTCA ATCGCCGCCG GGTGCAATAT GGCCCTGTGG AGCCGGTGGA GGCCCGCGAG
ATCTTTATTC GCAGCGCCTT GGCCGAAGGG GAGCTGCGCA CCAAGGAGGC ATTTTTTGTC
AACAACCGTG CGCTTATCGA CGATATCGAG GCGCTGGAGC ACAAGTCCCG CCGCCGCGAC
ATCTTGGTGG ACGAGCAGGC GCTGGTGGAT TTCTATGAGG CGCGCATTCC CGAGGGGATC
TACAACGCGC CTAAGCTGCT GACCTGGTGG AAGCAGGAGA AGAAGCGTCA GCCGCATCTG
CTGGACTTTG AACGTGAGCA GCTGATGAAG CGCAGCGACG AGCATATCTC GGCGCTGGAC
TTCCCCGACA GCTGGCATCA GGGCAACTTT AACCTGCCCC TGAGTTATCA CTTCGAGCCG
GCGGACGTAG ATGACGGCGT ATCGGTGCAT CTTCCCGTCG CGCTGCTTAA CCAGATAGAG
GCCCAGGGCT TCGACTGGTT GGTGCCGGGG CTGAGGGAAG AGAAGATCAC CGCGCTGATC
AAGTCCCTGC CTAAGACACT GAGACGTAAC TTCGTTCCGG CGCCGGATTA TGCCAGGGCC
TGCTTACAGG CGATGGCTAA TACTAATAGC AGCAGTGAGA CGAGCCTGCT GGAGGCCATG
TGTAAGCAGC TGCTGCGCAT GAGCGGCGTG CGTATCTCCG TCGATGATTT CGATCTCACC
CAGCTCGCGC CGCATCTTCT GATCAACTTC AAGGTGGAAG ATGACAAGGG TAAGTTGATC
GCACAGGGCA GGGAGCTTGA GCAGCTAAAA GATAAGCTAC AGGGCAGGGT AACCCAGGCG
ATTCGCAATG TTGCCGAGAG CGGCATAGAG CAAAGCGAGC TGACCCAGTG GAGCTTTGGC
GACTTGCCCA AACAGTATGA GAAGAAGCGG GGGAACTTCC AGGTGAAGGC CTTCCCCGCG
CTGGTGGACA ACAAAGACAG CGTGGCCATC AAGCTGTTTG ATGATGAGCA TGAGGCCGGC
CGCTGCCATA AGGCGGGTCT GCAGCGCCTC TTGCTGCTCA ACATGCCATC GCCGGTGAAG
CACCTGCAGA ACACCCTGCC CAACAAGGCC AAGTTGGCCA TGTACTTCAA CCCCTTTGGC
CAGGTGCAGT ATCTCATCGA CGATATCCTG TCGGCGGCGG TGCAGCAGTT GCTGGATGAG
AAGGGCTTAG ATGTGCGCAG CGCCGAGCAG TTCGAGCAGG CTAAAGATGT GGTGCGTCAG
GATCTTAACC CCACGGCGGC CAAGATCGCG CTGCAGGTGG AGGAGATCTT GACCCTGTAT
CAGAAGGTGA AGAAGCGCCT CAAGGGCAAG ATCAGCCTGG ATATCGCCTT TGCAATGAGC
GACATTCAGA CCCAGTTGGA TAACCTGGTA TTCAAGGGCT TTGTCGAGCA GTGCGGTTGG
CAGCGGCTTT CTGATTTAAT CAGGTATATC AAGGCGATAG ATAATCGTTT AGATAAGCTT
CCCGTGGATC CTAACCGTGA CCGCCTGCAT CTGCATAGCA TCAACAATGT GCAACAGACC
CTGGCAGCCC AGCTGGCCAA GGTGCCCCGC AGCGCGCCTG TGCCCGAGGC GCTGCAGGAG
GCTCGCTGGA TGATAGAGGA GTATCGCGTC TCCTGTTTCG CCCAGGTGTT AGGTACCGCC
TATCCCATCT CGGAGAAGCG GATCCTCAAC CGCATCGCCG AAGCCTGA
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| Protein sequence | MNSPRHPLSH AFLNQCFQAD ASRIKRRLHR LKKQADGEQK DEALAQLEEQ AIAAAAKVES
RRQNRPEISY PDALPVSQKR GEIAEAIANN QVVIVAGETG SGKTTQLPKI CLELGLGTRG
LIGHTQPRRL AARSVATRVA EELNSPLGEV VGFKVRFADA IKPTSYIKLM TDGILLAELS
SDKYLDQYDT IIIDEAHERS LNIDFILGYL KSVLKRRPDL KVIITSATID VERFSKHFNN
APVIEVSGRT YPVETRYRPL VGEQDEDLDL TDGIFAAVEE LMAEGPGDIL IFLNGEREIR
DLADQLNKQQ YRDTEVLPLY ARLSYGEQSK VFKSHRGRRI VLATNVAETS LTVPGIKYVI
DPGTARISRY SYRTKVQRLP IEPISQASAN QRQGRCGRVA PGICIRLYDE ADFNNRPEFT
DPEILRTNLA SVILQMLSIG LGDIEGFPFI QPPDARYIRD GFLLLEELQS VRKHKGQLQL
TPLGRQLASI PVDPRLARMV VQAKEYGCLH ETLVITAGLS IQDPRERPMD KKQAADEAHR
RFNDKDSDFI AWVKLWDHIK EQQKALSASQ FRKLCKQEFL AYLRVREWQD LYTQLRQAVH
DLKWKLNSEP ADYELLHKSL LTGLLSHIGF KDKDNEYLGA RNRKFFVFPG SPLAKKGPKW
IMAAEMTETS RLFARCCAKI QPEWVEPLAG HLVKKSYVEP HFEAKQGSVV ALENQQLYGL
TIVNRRRVQY GPVEPVEARE IFIRSALAEG ELRTKEAFFV NNRALIDDIE ALEHKSRRRD
ILVDEQALVD FYEARIPEGI YNAPKLLTWW KQEKKRQPHL LDFEREQLMK RSDEHISALD
FPDSWHQGNF NLPLSYHFEP ADVDDGVSVH LPVALLNQIE AQGFDWLVPG LREEKITALI
KSLPKTLRRN FVPAPDYARA CLQAMANTNS SSETSLLEAM CKQLLRMSGV RISVDDFDLT
QLAPHLLINF KVEDDKGKLI AQGRELEQLK DKLQGRVTQA IRNVAESGIE QSELTQWSFG
DLPKQYEKKR GNFQVKAFPA LVDNKDSVAI KLFDDEHEAG RCHKAGLQRL LLLNMPSPVK
HLQNTLPNKA KLAMYFNPFG QVQYLIDDIL SAAVQQLLDE KGLDVRSAEQ FEQAKDVVRQ
DLNPTAAKIA LQVEEILTLY QKVKKRLKGK ISLDIAFAMS DIQTQLDNLV FKGFVEQCGW
QRLSDLIRYI KAIDNRLDKL PVDPNRDRLH LHSINNVQQT LAAQLAKVPR SAPVPEALQE
ARWMIEEYRV SCFAQVLGTA YPISEKRILN RIAEA
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