| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1760 |
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| Symbol | |
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| ID | 4923210 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2010302 |
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| End bp | 2012647 |
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| Gene Length | 2346 bp |
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| Protein Length | 781 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640163321 |
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| Product | (NiFe) hydrogenase maturation protein HypF |
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| Protein accession | YP_001093885 |
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| Protein GI | 127512688 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0068] Hydrogenase maturation factor |
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| TIGRFAM ID | [TIGR00057] Sua5/YciO/YrdC/YwlC family protein
[TIGR00143] [NiFe] hydrogenase maturation protein HypF |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCATCGA CCAAGCGCGT ACGACTGGCG GTAACAGGTA TCGTCCAGGG GGTCGGCTTT
CGCCCCTTCG TCTACCGCTG GGCGACTGAG CTTGGTCTGC TGGGCCTGAC CTTCAACCAT
AGCAAGGGGG TGACAGTGGA GCTGCAAGGC AGCGATGCGG CGATTCACGC CTTCGTCGAG
GCCCTGACCC AGACACCGCC GCCACTTGCC CGCATCGACA GCCTGAGCCA GACAGAACTG
CCGCTTGAAG AGTGCAACAG CTTCGAGATA GTACACAGCC AGGCGGATGC CAAGGCCGTG
GTGGCCGTCT CCAGCGACAA GAGCAGTTGC CAGGAGTGTC TCGATGAGAT CATGGATCCC
GGCAACCGTC ACTATCAGTA CCCTTTTACC AACTGCACCA ACTGCGGCCC CAGATATACC
CTGATCCGCG CCCTACCCTA TGACAGGCCC AACACCGCCA TGGCAGAATT CGCCATGTGT
GATGCCTGCG CGGCGGCCTA TCAGAATCCA CTGGACAGGC GCTACCACGC CCAGCCGGTG
AGCTGCCCAG ATTGCGGCCC ACAGCTCAGT CTATTAGACG CGCAGCAAAT ACCACTGGCA
GAGAAGAACG CCGCGCTGGA TCTGGCCGTC GAGCTGCTAG CCCAGGGCAA GACCTTGGCC
ATCAAGGGGC TCGGCGGATT TCATCTGGTG TGCGATGCCA CCAACCATGA GGCGGTAATG
CAGCTGAGAT CCCGTAAGCA GAGACCGGCC AAGCCCTTTG CCGTGATGTG CGCCTCGCTG
CCGATGGCCA AGACGCTGGC CTGCGGCAGC GACGCCGAAT GGCAACTGCT GCAAAGCGCC
GAGCGGCCCA TCACCCTGCT GCAAAGGGCG CTCAACAAAG ATGAATCCAG TAGCGATGCG
CTGAGCAGCT ACGTGCTGAG CCCGGCCGTG GCCCCCGGCA TCGACAGACT CGGGCTGTTT
CTGCCCTACA CGCCGCTGCA TCAGTTGCTG CTCAGCAGGC TAAACCGCCC GCTCGTGGCC
ACCAGTGCCA ACCGTAGCGG CGAGCCCATC ATCACACATG CAGAGCAGAT CTTCGAGCGC
CTGGGCGAGG TGGTCGATGC CGTGCTGGAT CATAACCGCG AGATCCTTAA CGGCTGTGAC
GACAGTGTGG TGCAGATGGT GGATGACAAG TTGCAGGTGA TCCGTCTGGC GCGGGGCTAT
GCGCCGCTGA CCCTGGCGCT ACCAGAGGAA GTCCCCCAAG AAACCTTGGC CGTTGGCGCC
CAGCAGAAGA ACAGCATCGC CTTCGGCTTC GATCACAACC TGGTGCTCAG CCCACACATA
GGCGATCTCT TCAGCCTGGA GGCGGAGCAA TATTTTATCG ACACCCTGGC GACCTTTAAG
CGCCTGTATC AGTTCAGCCC CAAACACCTG GTGAGCGACA AGCATCCCGA CTACGCCTCG
ACCATCTGGG CGCAGCAACA AAAGGATGCG CAAGGCATCG CCTACACTCA GGTGCAGCAC
CACTACGCCC ATATCCTCAG CGTCATGGCC GTCAATCAGA GAGTCGACAA GGTATTGGGA
TTTAGCTTCG ATGGCACGGG CCTAGGCGAT GAGCGCCAGC TCTGGGGCGG CGAAGCCATG
CTAGCCGATA TCTCAGGTTT CAAGCGCGTC GCCCACCTAA GCCCAATGGC GCTGATCGGC
GGCGAGCAGG CAATTAAAGA CCCGCGCCGC ATCATGCTGG CACTGCTGTT CGCGCGTTAC
TCGCCAGATG AAATTAAGGC GCTGCCACTG GCATCGCTTG AGGAACTGCC AGCCAGCCTC
ATCGGCAACC TGCATACCCT GTGGCACAAA GGTGTCGCGA TTCAGATGAC CAGCTCCATC
GGCCGTCTGT TTGACGCCAC CGCCTGCCTA CTGGGACTGA TGCAGACCAC CCAGTTTGAG
GGTCAGGCCG GCATGTTGAT CGAGGCCAAG GCCAATGAGG TCAGCGAGGC GCAGTTAGAA
AGCGAGCTAG CAGCGGCGGA TCTAGCCTTC AGCCTGTGTG AGATCGACGG CGTATGGCAG
CTCGCATCCC TGTGGGAGCA GATGGTCGAT GCCCTACTCA AATGGCAGGA CAAGCCCGAA
GGCATAAGCC TTATCGCCCG CGGCTTTATG AACGCGCTGG CCCAGGCGGT TACCGACTGC
GCCATCAAGC ATAGTGGCTT CGACGTGGCG CTCTGCGGCG GCGTGTTTCA AAACCGCTAT
CTACTCAGCG AGACACGTAA ACGCCTAGAG ATGGCTAAGA TTAAGGTGCT CGATTCGCAC
CAGGTACCGG TTAACGATGG CGGCATTGCC CTGGGGCAAC TCTGGTACGC CATACACAAG
CATTAA
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| Protein sequence | MASTKRVRLA VTGIVQGVGF RPFVYRWATE LGLLGLTFNH SKGVTVELQG SDAAIHAFVE
ALTQTPPPLA RIDSLSQTEL PLEECNSFEI VHSQADAKAV VAVSSDKSSC QECLDEIMDP
GNRHYQYPFT NCTNCGPRYT LIRALPYDRP NTAMAEFAMC DACAAAYQNP LDRRYHAQPV
SCPDCGPQLS LLDAQQIPLA EKNAALDLAV ELLAQGKTLA IKGLGGFHLV CDATNHEAVM
QLRSRKQRPA KPFAVMCASL PMAKTLACGS DAEWQLLQSA ERPITLLQRA LNKDESSSDA
LSSYVLSPAV APGIDRLGLF LPYTPLHQLL LSRLNRPLVA TSANRSGEPI ITHAEQIFER
LGEVVDAVLD HNREILNGCD DSVVQMVDDK LQVIRLARGY APLTLALPEE VPQETLAVGA
QQKNSIAFGF DHNLVLSPHI GDLFSLEAEQ YFIDTLATFK RLYQFSPKHL VSDKHPDYAS
TIWAQQQKDA QGIAYTQVQH HYAHILSVMA VNQRVDKVLG FSFDGTGLGD ERQLWGGEAM
LADISGFKRV AHLSPMALIG GEQAIKDPRR IMLALLFARY SPDEIKALPL ASLEELPASL
IGNLHTLWHK GVAIQMTSSI GRLFDATACL LGLMQTTQFE GQAGMLIEAK ANEVSEAQLE
SELAAADLAF SLCEIDGVWQ LASLWEQMVD ALLKWQDKPE GISLIARGFM NALAQAVTDC
AIKHSGFDVA LCGGVFQNRY LLSETRKRLE MAKIKVLDSH QVPVNDGGIA LGQLWYAIHK
H
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