| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1757 |
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| Symbol | |
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| ID | 4920951 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2007954 |
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| End bp | 2009069 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640163318 |
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| Product | hydrogenase expression/formation protein HypD |
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| Protein accession | YP_001093882 |
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| Protein GI | 127512685 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0409] Hydrogenase maturation factor |
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| TIGRFAM ID | [TIGR00075] hydrogenase expression/formation protein HypD |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAGAGC TAAAACAGCT GTATCAGGGC TTTAGAGATC CTGAAACCAT ACACAACCTG
GCTAAGGAGA TCGCCCTGCA CGCCGCCAAG CATGAGGGCA ACATCTACAT TATGGAGGTG
TGCGGCGGTC ATACCCACAC CATCATGAAA TATGGCCTCA ACCAGCTGCT GCCAGACAAC
ATAGAATTTG TCCACGGTCC GGGCTGCCCC GTGTGTGTCA TGCCCAAGGA GCGCATCGAT
CACGCCGCTA TCCTGGCCTC TCAGCCCGAT GTGATCCTGG TGACTCTGGG GGATATGATC
CGCGTGCCCG GCTCAAAAGG CAGCCTGGCC GAATTCAGGG CCAAGGGCTG CGATATCCGC
CCGCTCTACG ATCCCATGGA CGCCCTGACC ATTGCCAAGG AGAACCCGGA TAAGCAGGTT
ATCTTCTTCG CCATAGGATT TGAAACCTCA ACCCCCATGA CCGCCGTGCT GATCGAACAG
GCCGAGAAAC AGGGAATTGA TAACCTACTG TTTCATATTA ACCATGTGCT GGTGCCACCG
GCCATAGACG CCGTGATGGC CGATCCCCAG GCCAAGGTGA ATGCCTTTAT CGGCCCGGCT
CACGTGAGCG TGATCGCCGG CGCCAAGCTC TACCGCCCCG CCGTGACCCA ATACGGCACC
CCTGTGGTGG TCTCAGGCTT CGAGCCTGTG GATGTGATGG AATCTATCCT GCGCATCGTC
AAGCAGAAGG TCGAAGGCGT CGCCGAACTC GACGTACAGT ACAGCCGCGC CGTGAGCGAG
GAAGGCAATG TGCACGCCCA GCAGAAGGTC AATCAGTACC TCACCGTCAG GCCACATTTT
CGCTGGCGCG GCCTGGGGCC GCTGAATGAG TCGGCGTTGA TGCTAAGACC CGAATTTGCC
CACCGCGACG CCGAGGTGAT CTATCGCGAC AAGCTGGACG TGGCCGATAT CGACGATCAC
AAGGCCTGCC AGTGCGGCGA CATCTTAAGA GGCATCGCCA AGCCGAAAGA CTGTAAGGTC
TTTGGCCGTG GCTGCACCCC AGAGACCCCC CTCGGCAGCT GCATGGTCAG CTCGGAAGGC
GCCTGCAACG CCTATTACCG CTATAACGGA GTCTAA
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| Protein sequence | MIELKQLYQG FRDPETIHNL AKEIALHAAK HEGNIYIMEV CGGHTHTIMK YGLNQLLPDN
IEFVHGPGCP VCVMPKERID HAAILASQPD VILVTLGDMI RVPGSKGSLA EFRAKGCDIR
PLYDPMDALT IAKENPDKQV IFFAIGFETS TPMTAVLIEQ AEKQGIDNLL FHINHVLVPP
AIDAVMADPQ AKVNAFIGPA HVSVIAGAKL YRPAVTQYGT PVVVSGFEPV DVMESILRIV
KQKVEGVAEL DVQYSRAVSE EGNVHAQQKV NQYLTVRPHF RWRGLGPLNE SALMLRPEFA
HRDAEVIYRD KLDVADIDDH KACQCGDILR GIAKPKDCKV FGRGCTPETP LGSCMVSSEG
ACNAYYRYNG V
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