| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1722 |
|---|
| Symbol | |
|---|
| ID | 4923084 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1976169 |
|---|
| End bp | 1976882 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640163284 |
|---|
| Product | dethiobiotin synthase |
|---|
| Protein accession | YP_001093848 |
|---|
| Protein GI | 127512651 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0132] Dethiobiotin synthetase |
|---|
| TIGRFAM ID | [TIGR00347] dethiobiotin synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000192281 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTATT TCATCGCCGG CACAGATACC GACAGTGGCA AGACCTTGGT GGCTTCCTCA
CTCCTCTATC TGGCGAGCAA ACAAGGCAGC ACCTTAGGGG TCAAGCCCAT CGCCTCGGGT
TGTGAGCCGA CGTCTGAAGG GCTGAGAAAC AGCGACGCCC TGGCATTGAT GGCTCAGTCC
AATGTGAAAC TTGCCTATGA AAGAGTGAAC CCCTTTGCTT TTAAGCCTGC CATCGCGCCG
CATATCGCCG CCAAGCAGGT AGGCGTGACT CTTAATGCTG ATCTGGTCAC GGCTCACCTT
AAGACGCTGC CATTCGATGA GGTGGATTTT GCCTTGGTTG AGGGGGCGGG TGGCTGGCGG
CTGCCGCTTA ACCATGCGCT TCGCGTTCAG GGTAAGCTTA ATCCACAGGC CTTTCTTTCC
ACTGTGGCAA TCGATCTGCA GCTGCCGGTG ATCTTGGTGG TCGGGGTTAA GCTGGGTTGC
CTCAACCACG CACTGCTGAC TCAAGAGGCG ATTCAGGCCG ATGGGGTAAA GATAGCTGGC
TGGGTAGCAA ACTGCGTCGA TCCCGATATG CAGGTGACTG ACGAGAACCT CTTGGCGCTT
ACTGCTTTGA TGGACGCTCC ATGTCTCGGG GTCATCCCAC ATCTTACTGA ATGTTCTAGC
CAAAACGCGG CGCAATACTT AGATCTTACC AAGCTGGCAC TAGGTCAAGG TTAG
|
|---|
| Protein sequence | MRYFIAGTDT DSGKTLVASS LLYLASKQGS TLGVKPIASG CEPTSEGLRN SDALALMAQS
NVKLAYERVN PFAFKPAIAP HIAAKQVGVT LNADLVTAHL KTLPFDEVDF ALVEGAGGWR
LPLNHALRVQ GKLNPQAFLS TVAIDLQLPV ILVVGVKLGC LNHALLTQEA IQADGVKIAG
WVANCVDPDM QVTDENLLAL TALMDAPCLG VIPHLTECSS QNAAQYLDLT KLALGQG
|
|---|
| |