Gene Shew_1714 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1714 
Symbol 
ID4922223 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1967062 
End bp1967934 
Gene Length873 bp 
Protein Length290 aa 
Translation table11 
GC content53% 
IMG OID640163276 
Productalpha/beta hydrolase fold 
Protein accessionYP_001093840 
Protein GI127512643 
COG category[R] General function prediction only 
COG ID[COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)  
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCGATT CGTTATTTCC TATTAAACGC AATTACTTAG ATCGTAATGG TCACAAGTTG 
CAATATGTGA ATGAAGGCCA GGGTGAGCCC GTGGTCATGG TGCATGGCAA CCCGAGCTGG
TCTTTCTATT ATCGCAATCT GGTGACGGCG TTGAGCCCTA ATCATCAGTG CATAGTGCCG
GATCATATCG GCTGCGGTCT GTCGGACAAG CCAGACGATG CCGGTTACGA CTATACCCTG
AAGAATCGTA TCGACGATCT GGAAGCCTTG CTGGATCACC TCGAGGTGAA AGAGAAGATC
ACCCTGATCG TTCACGACTG GGGCGGCATG ATAGGCATGG GTTATGCGGC CCGTCATCCC
GAGCGGATCA AGAAAATCGT GGTGCTCAAC ACTGGCGCCT TTCATCTGCC AGAGGCCAAG
CCGTTTCCTT GGGCGCTGTG GATCTGTCGT AACACCTTAC TGGGCACAGT ATTAGTGCGC
GGCTTTAACG CTTTCTCCTC TATCGCCTCT TATGTAGGGG TGAAGCGCGC GCCTATGCCA
AAGGCGATAC GCGAGGCCTA TGTGGCGCCC TTTAACTCTT GGGCGAATCG TATCTCGACC
CTGCGCTTCG TGCAGGATAT TCCGCTCAAG CCTGGCGATC GCAACTATGA ACTGGTGAGT
GAGATCAGTG AAAAGCTGAA CCAGTTTAAC CAACTGCCTA TGATGATCTG CTGGGGACTC
AAAGACTTTG TATTCGACAA ACACTTCCTC GATGAGTGGA AGCGTCGATT CCCCGAGGCC
GAGGTGCATG AGTTTGCCGA CTGTGGTCAC TATATCCTGG AAGATGCCAG CGATGAGGTG
GTGGCCCAGG TGCAGCAATT TATGGCGCGT TAA
 
Protein sequence
MLDSLFPIKR NYLDRNGHKL QYVNEGQGEP VVMVHGNPSW SFYYRNLVTA LSPNHQCIVP 
DHIGCGLSDK PDDAGYDYTL KNRIDDLEAL LDHLEVKEKI TLIVHDWGGM IGMGYAARHP
ERIKKIVVLN TGAFHLPEAK PFPWALWICR NTLLGTVLVR GFNAFSSIAS YVGVKRAPMP
KAIREAYVAP FNSWANRIST LRFVQDIPLK PGDRNYELVS EISEKLNQFN QLPMMICWGL
KDFVFDKHFL DEWKRRFPEA EVHEFADCGH YILEDASDEV VAQVQQFMAR