| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1689 |
|---|
| Symbol | |
|---|
| ID | 4920425 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 1942663 |
|---|
| End bp | 1943484 |
|---|
| Gene Length | 822 bp |
|---|
| Protein Length | 273 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640163251 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001093815 |
|---|
| Protein GI | 127512618 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0105422 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.129685 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGGAA CCTTGAGAAA AATGCGCACC AGGCTCGATG AGCAGGGCCT GGCCAATTAT
CAGCTGCTAG TGGGCGACAA TGAAGTCGAA CTGAACCCCT TTATCGGTAG CAGTATCAAA
CTGGTTCATA CGGGCAACAT CTTCTGCTGC AACTGCGGTA AGAAGACCAA GAAGAGCTAC
TCCCAGGGCC ACTGCTTCGT CTGCATGAAG AAGCTGGCGA GCTGCGATAT GTGCATCATG
AAACCCGAGA CCTGCCACTT TGCCGAGGGG ACCTGCCGCG AACCCGAGTG GGGCGAGGCC
AACTGTTTCG TGCCCCATTA TGTCTACCTC TCCAACACCT CGGGGCTCAA GGTGGGGATC
ACCCGCCATA CCCAGCTGCC GACCCGCTGG ATAGATCAGG GTGCGACCCA AGGCCTGCCT
ATCCTTAAAG TCTCCAGTCG TCAGCTGTCT GGCCTTATCG AGGTGGAGCT GGCCAAGATG
ATCGCCGACA AGACCAACTG GCGCGCCATG CTAAAAGGCA ATGCCGACCC TTTACCGCTG
AAACAACATG CCGAAGAGCT GCTACCGCAG ATTGAGCAGC ACATTCACAG CCTGGCGATG
GCCCATGGCG AATACGCCAT CGAGCGGTTG AATGAAGAGA TAGTGGCCAT CGACTATCCG
GTGAGCGAGT TCCCCACCAA GATAGCCTCC CACAACTTCG ACAAGGATCC GGTAGTGAGC
GGTACCCTAC TCGGGATCAA GGGGCAATAC CTGATCTTCG ACACTGGGGT GATCAACCTG
CGTAAATTTA CCGCCTACGA GGTCAGCTTC GAGGCCGAGT GA
|
|---|
| Protein sequence | MQGTLRKMRT RLDEQGLANY QLLVGDNEVE LNPFIGSSIK LVHTGNIFCC NCGKKTKKSY
SQGHCFVCMK KLASCDMCIM KPETCHFAEG TCREPEWGEA NCFVPHYVYL SNTSGLKVGI
TRHTQLPTRW IDQGATQGLP ILKVSSRQLS GLIEVELAKM IADKTNWRAM LKGNADPLPL
KQHAEELLPQ IEQHIHSLAM AHGEYAIERL NEEIVAIDYP VSEFPTKIAS HNFDKDPVVS
GTLLGIKGQY LIFDTGVINL RKFTAYEVSF EAE
|
|---|
| |