Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1681 |
Symbol | |
ID | 4920472 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1931402 |
End bp | 1932892 |
Gene Length | 1491 bp |
Protein Length | 496 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640163243 |
Product | diguanylate cyclase with PAS/PAC sensor |
Protein accession | YP_001093807 |
Protein GI | 127512610 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.650455 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.00000301378 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGCACCACC CATTTAAGCC GTTCAAAATC TATAGTCTGG CCATCTTATA TGTCGTCTTT CTGGTGGGCG CCTTCTCTAT CCTGATGGCC AGCATAGATC AGTCTCAGCG CGACTGGAAA CGCCACACCT ATGAGGCGCT GGAGAAGACC GCCTATTTCA ACGACGCCAT GGTAGCCCTG GGTTACGGCG GCTTTATCCA CGACTTTAAG AATGCGGTGA TCCGCCAGGA CTTGAGCTAT CTGAGGCGGG CGGAAACCGA GATAGAGCTG GGGTTAGACT CGCTGCAGAA ATACCTGCAA CGGGCGCCCG AGCATACCGC CGAGGTGCGG GCGATTCAGT CTGTGGTCAG CCAATATCGC CATAACCTGC CTAAGCTCAG GCAGATGCTG GAGGAGAAGC AGTCGGTGGC GGATATTGAC CGGGTGGTTC GCGTCGACGA TACTCCGGCC ATCGAGGCGA TAGAGGCCAT ACTCTCAAGC CACGCCCAGA GCCCTAACAG CCTATTCGAG CAGGCAGGCA GCGCCCATCA GCGGGTGAAT CATATGCTGC TGGTGATCCT CTGCGCCCTG GTGCTGGTCA GCATCTTAGT GTTTAGCTTT ATCCGTTATG TGAATAAACG CCTGGCGATC AAGCTTAAGG ATCTCGAGGT GATCTTCCGT TGCGCCCCCA ACGCCATCTT CTCGGTGAAC GAACATGGCA CCATCATCTC TGCCAATCGC GAGACCATGC GCCTGTTTGG CTTCTCCGAG CGGGCGCTCA ACAAGATCAA TGTCGACGAC CTGGTGCCCA GCGCCACCAA GGAGAAGCAC AAGAAGCTGC GCCTCGAGTT TCAAAAATCA GACCGGGTGC AGCCCATGTC CCAGCGCAAC ACCATCTTCT ACGGCAAGAA GCTTAACGGC GACGTGTTTC CCGCCAGCAT CTCTATCGCC ACCTATGGGG TGGGGGATGA GAAGCACAGC ATCGTGGTGA TCAAAGATCT CAGCGATGAG ATGCAGTACA AGTCCCAGGC CAATACCGAT CCCCTGACAA AGGTCGCCAA CCGCCGCGCC ATCAACCGTC AGCTGGCGGC AGCCATCAGC CGCAGCAATC GTCAGCAGAC CCCGCTTGCG GTGTGTATCT TCGATATTGA TCACTTCAAG GCGGTCAACG ATAAACATGG CCATCTGGTG GGCGATGATG TGTTGCAGCG GGTGGCCAAG ATCTTCAGCG ACGCCATACG TAAGACAGAC TTTGTCGGTC GCTGGGGAGG CGAGGAGTTT GTGATCATCC TGGAAGATAC AGACAAAGAG GGTGCCAAGC ATTTTGCCGA CAAGCTCAGG CAGGAGGTGA AGCGCCGCAG CCAGGGGATA GATTTCCCCG TGGCCATTAC CTTAAGCGCC GGCGTATCAG TCTATTGTCA GGACGACAAG CAAGATTGCC TGTTCAACCA CGCCGATCAG GCCCTCTACC GCGCCAAGGA GAGCGGCCGC GACTGCGTGG TAGTGATTTA A
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Protein sequence | MHHPFKPFKI YSLAILYVVF LVGAFSILMA SIDQSQRDWK RHTYEALEKT AYFNDAMVAL GYGGFIHDFK NAVIRQDLSY LRRAETEIEL GLDSLQKYLQ RAPEHTAEVR AIQSVVSQYR HNLPKLRQML EEKQSVADID RVVRVDDTPA IEAIEAILSS HAQSPNSLFE QAGSAHQRVN HMLLVILCAL VLVSILVFSF IRYVNKRLAI KLKDLEVIFR CAPNAIFSVN EHGTIISANR ETMRLFGFSE RALNKINVDD LVPSATKEKH KKLRLEFQKS DRVQPMSQRN TIFYGKKLNG DVFPASISIA TYGVGDEKHS IVVIKDLSDE MQYKSQANTD PLTKVANRRA INRQLAAAIS RSNRQQTPLA VCIFDIDHFK AVNDKHGHLV GDDVLQRVAK IFSDAIRKTD FVGRWGGEEF VIILEDTDKE GAKHFADKLR QEVKRRSQGI DFPVAITLSA GVSVYCQDDK QDCLFNHADQ ALYRAKESGR DCVVVI
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