Gene Shew_1681 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1681 
Symbol 
ID4920472 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1931402 
End bp1932892 
Gene Length1491 bp 
Protein Length496 aa 
Translation table11 
GC content56% 
IMG OID640163243 
Productdiguanylate cyclase with PAS/PAC sensor 
Protein accessionYP_001093807 
Protein GI127512610 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.650455 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000301378 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGCACCACC CATTTAAGCC GTTCAAAATC TATAGTCTGG CCATCTTATA TGTCGTCTTT 
CTGGTGGGCG CCTTCTCTAT CCTGATGGCC AGCATAGATC AGTCTCAGCG CGACTGGAAA
CGCCACACCT ATGAGGCGCT GGAGAAGACC GCCTATTTCA ACGACGCCAT GGTAGCCCTG
GGTTACGGCG GCTTTATCCA CGACTTTAAG AATGCGGTGA TCCGCCAGGA CTTGAGCTAT
CTGAGGCGGG CGGAAACCGA GATAGAGCTG GGGTTAGACT CGCTGCAGAA ATACCTGCAA
CGGGCGCCCG AGCATACCGC CGAGGTGCGG GCGATTCAGT CTGTGGTCAG CCAATATCGC
CATAACCTGC CTAAGCTCAG GCAGATGCTG GAGGAGAAGC AGTCGGTGGC GGATATTGAC
CGGGTGGTTC GCGTCGACGA TACTCCGGCC ATCGAGGCGA TAGAGGCCAT ACTCTCAAGC
CACGCCCAGA GCCCTAACAG CCTATTCGAG CAGGCAGGCA GCGCCCATCA GCGGGTGAAT
CATATGCTGC TGGTGATCCT CTGCGCCCTG GTGCTGGTCA GCATCTTAGT GTTTAGCTTT
ATCCGTTATG TGAATAAACG CCTGGCGATC AAGCTTAAGG ATCTCGAGGT GATCTTCCGT
TGCGCCCCCA ACGCCATCTT CTCGGTGAAC GAACATGGCA CCATCATCTC TGCCAATCGC
GAGACCATGC GCCTGTTTGG CTTCTCCGAG CGGGCGCTCA ACAAGATCAA TGTCGACGAC
CTGGTGCCCA GCGCCACCAA GGAGAAGCAC AAGAAGCTGC GCCTCGAGTT TCAAAAATCA
GACCGGGTGC AGCCCATGTC CCAGCGCAAC ACCATCTTCT ACGGCAAGAA GCTTAACGGC
GACGTGTTTC CCGCCAGCAT CTCTATCGCC ACCTATGGGG TGGGGGATGA GAAGCACAGC
ATCGTGGTGA TCAAAGATCT CAGCGATGAG ATGCAGTACA AGTCCCAGGC CAATACCGAT
CCCCTGACAA AGGTCGCCAA CCGCCGCGCC ATCAACCGTC AGCTGGCGGC AGCCATCAGC
CGCAGCAATC GTCAGCAGAC CCCGCTTGCG GTGTGTATCT TCGATATTGA TCACTTCAAG
GCGGTCAACG ATAAACATGG CCATCTGGTG GGCGATGATG TGTTGCAGCG GGTGGCCAAG
ATCTTCAGCG ACGCCATACG TAAGACAGAC TTTGTCGGTC GCTGGGGAGG CGAGGAGTTT
GTGATCATCC TGGAAGATAC AGACAAAGAG GGTGCCAAGC ATTTTGCCGA CAAGCTCAGG
CAGGAGGTGA AGCGCCGCAG CCAGGGGATA GATTTCCCCG TGGCCATTAC CTTAAGCGCC
GGCGTATCAG TCTATTGTCA GGACGACAAG CAAGATTGCC TGTTCAACCA CGCCGATCAG
GCCCTCTACC GCGCCAAGGA GAGCGGCCGC GACTGCGTGG TAGTGATTTA A
 
Protein sequence
MHHPFKPFKI YSLAILYVVF LVGAFSILMA SIDQSQRDWK RHTYEALEKT AYFNDAMVAL 
GYGGFIHDFK NAVIRQDLSY LRRAETEIEL GLDSLQKYLQ RAPEHTAEVR AIQSVVSQYR
HNLPKLRQML EEKQSVADID RVVRVDDTPA IEAIEAILSS HAQSPNSLFE QAGSAHQRVN
HMLLVILCAL VLVSILVFSF IRYVNKRLAI KLKDLEVIFR CAPNAIFSVN EHGTIISANR
ETMRLFGFSE RALNKINVDD LVPSATKEKH KKLRLEFQKS DRVQPMSQRN TIFYGKKLNG
DVFPASISIA TYGVGDEKHS IVVIKDLSDE MQYKSQANTD PLTKVANRRA INRQLAAAIS
RSNRQQTPLA VCIFDIDHFK AVNDKHGHLV GDDVLQRVAK IFSDAIRKTD FVGRWGGEEF
VIILEDTDKE GAKHFADKLR QEVKRRSQGI DFPVAITLSA GVSVYCQDDK QDCLFNHADQ
ALYRAKESGR DCVVVI