Gene Shew_1657 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1657 
SymbolsucC 
ID4920808 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1906416 
End bp1907582 
Gene Length1167 bp 
Protein Length388 aa 
Translation table11 
GC content50% 
IMG OID640163219 
Productsuccinyl-CoA synthetase subunit beta 
Protein accessionYP_001093783 
Protein GI127512586 
COG category[C] Energy production and conversion 
COG ID[COG0045] Succinyl-CoA synthetase, beta subunit 
TIGRFAM ID[TIGR01016] succinyl-CoA synthetase, beta subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0504146 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.508057 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATTTGC ATGAGTATCA GGCAAAAGCC CTATTTGCCG AATATGGTTT ACCAGTGTCA 
GAAGGTTATG CTTGTGATAC CCCTCAAGAG GCGGTAGAAG CGGCTGGCCA TATTGGCGGA
GATATGTGGG TTGTTAAGTG TCAAGTACAC GCAGGCGGCC GTGGTAAAGC AGGTGGCGTT
AAAGTTACCG GCGATAAAGA AGAGATCAGA GCATTTGCTG AGCATTGGTT AGGTAAGAAC
CTAGTAACTT ATCAGACTGA CGAAAAAGGT CAGCCAGTTG CTAAGATCCT AGTCGAAAGC
TGCACTGATA TCGCAAACGA GCTGTACCTA GGTGCCGTTG TTGACCGTGC GACCCGTCGC
GTTGTCTTCA TGGCGTCTAC CGAAGGTGGC GTTGAGATTG AAACAGTTGC CGAAGAGACA
CCTGAGCTGA TCCACAAGGC GATTATCGAT CCTTTGACAG GTCCTCAGCC TTACCAGGCA
CGCGATCTTG GCTTCAAGTT GGGTCTGAAC CCAACTCAGA TGAAGCAGTT CACTAAAGTC
TTCATGGGTC TGGCGACTAT GTTCACCGAT CACGACTTCG CACTGCTTGA GATCAACCCT
CTGGTTATCA CCACCGAAGG CAACATCCAC TGTCTAGACG GTAAGATTGG TATCGATGGC
AACGCACTGT TCCGTCAACC AAAGATCCGT GACATGCACG ATCCATCACA GGATGACGCT
CGTGAAGCTC ACGCGGCGAA ATTCGAGCTG AACTATGTTG CCCTAGACGG TAACGTAGGC
TGCATGGTAA ACGGTGCCGG CCTAGCAATG GGTACTATGG ACATCGTTAA CCTGCACGGT
GGCAAGCCAG CTAACTTCCT GGACGTTGGT GGCGGCGCGA CTAAAGAGCG TGTTGCTGAA
GCATTCAAGA TCATCTTGTC TGACGCTAAC GTGAAAGCGG TTCTGGTTAA CATCTTCGGT
GGTATCGTAC GTTGTGACAT GATCGCAGAA GGTATCATTG GTGCCGTTAA AGAAGTGGGT
GTTGAAGTGC CAGTGGTTGT TCGTCTAGAA GGTACTAACG CAGATCTAGG TCGCGAAGTA
TTGGCTAACT CTGGTCTTGA CATTATTGCA GCCGAGTCGC TAACCGACGC TGCTGTTAAA
GTTGTTGCTG CTGCGGAGGG CAAATAA
 
Protein sequence
MNLHEYQAKA LFAEYGLPVS EGYACDTPQE AVEAAGHIGG DMWVVKCQVH AGGRGKAGGV 
KVTGDKEEIR AFAEHWLGKN LVTYQTDEKG QPVAKILVES CTDIANELYL GAVVDRATRR
VVFMASTEGG VEIETVAEET PELIHKAIID PLTGPQPYQA RDLGFKLGLN PTQMKQFTKV
FMGLATMFTD HDFALLEINP LVITTEGNIH CLDGKIGIDG NALFRQPKIR DMHDPSQDDA
REAHAAKFEL NYVALDGNVG CMVNGAGLAM GTMDIVNLHG GKPANFLDVG GGATKERVAE
AFKIILSDAN VKAVLVNIFG GIVRCDMIAE GIIGAVKEVG VEVPVVVRLE GTNADLGREV
LANSGLDIIA AESLTDAAVK VVAAAEGK