Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1653 |
Symbol | sdhA |
ID | 4921622 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1899567 |
End bp | 1901333 |
Gene Length | 1767 bp |
Protein Length | 588 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640163215 |
Product | succinate dehydrogenase flavoprotein subunit |
Protein accession | YP_001093779 |
Protein GI | 127512582 |
COG category | [C] Energy production and conversion |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup [TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00109405 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGTATTC CAGTACGTGA GTTTGATGCA GTCGTAATTG GCGCCGGTGG CGCGGGTATG CGAGCTGCAC TACAGATTTC TAAAGAAGGT AAGAGCTGCG CGCTGTTATC TAAAGTATTC CCAACGCGTT CTCATACCGT TTCTGCCCAG GGTGGTATTA CCGTTGCCCT AGGTAACGCC CATGAAGACC ATTGGGAACA GCACATGTAC GATACCGTTA AGGGTTCCGA CTTCATCGGT GATCAAGACG CGATCGAATT TATGTGTCAA ACCGGTCCAG AAGCCATTAT CGAACTTGAG CACATGGGTT TGCCATTCTC TCGTTTCGAT AACGGTAAGA TCTATCAGCG TCCTTTCGGC GGCCAATCGA AGAACTTCGG TGGCGAGCAG GCGGCACGTA CCGCTGCGGC GGCAGACCGT ACCGGTCACG CCCTGTTGCA CTGTCTATAC CAACAGAACG TTAAGCATAA GACTGAAGTC TTCTCTGAGT GGTATGCACT GGATCTGGTG AAGAACGAAG ACGGTGCCAT CGTAGGTTGT ACTGCAATCG AAATCGAAAC CGGCGAAATC GTTTACTTCA AGTCTAAGGC CACCATTCTG GCTACCGGTG GTGCGGGTCG TATCTACGCC TCTACTACTA ACGCTCACAT CAACACCGGT GACGGTGTCG GCATGGCAAT GCGCGCTGGC GTGCAGATGC AAGACATGGA GATGTGGCAG TTCCACCCAA CCGGTATCGC CGGCGCGGGT GTACTGGTAA CCGAAGGTTG TCGTGGTGAA GGCGGATACC TGCTGAACAA AGACGGCGAG CGCTTCATGG AGCGTTATGC GCCAAACGCG AAAGACCTGG CCTCTCGTGA CGTGGTAGCA CGTTCTATGA TGACTGAGAT CCGTGAAGGT CGTGGCCTCG ACGGTCCACT AGGTCCTCAC TGTCTACTGA AACTCGATCA CTTAGGTAAA GAGACGCTTG AAGCACGCCT ACCAGGCGTT TGTGAACTGT CTCGTACCTT CGCGCATATC GATCCAGCCG ATGGCCCAAT CCCTGTACTG CCAACCTGTC ACTACATGAT GGGTGGTCTG CCTGCTAAGG TGAGCGGTCA GGTGATCCGT AAGAATGAAG ATGGCAGCGA AAGCGATGTC GTTGGTCTGT TTGCCGTGGG TGAGATTGCC TGTGTATCGG TACACGGTGC GAACCGCCTG GGTGGTAACT CACTACTCGA CCTCGTGGTC TTTGGCCGCG CAGCGGGTCA GCACCTGGGT AAGGCGCTGG ATGAGACTGC CGATCCTAAA GAAGCGAGCG CCGATGAGAT TGCTAAGTCG CTTGAGCGTC TAAATCGTTG GGAAAGCAAC AAAGACGGTG AAGATCCTGC GCAGATCCGT AAAGATCTTC AGCTTTGTAT GCAGCTTAAC TTCTCGGTAT TCCGTACCGG CGAGGCAATG GCAGAAGGTC TTGAAGAGCT TAAGGCGATT CGTGAGCGTC TGGCTAATGC CAAGCTGTCT GACAACTCAA GAGAGTTCAA CACTCAGCGT ATCGAGTGTC TAGAGCTAGA TAACCTGATG GCGACAGCAA TTGCGACTGC TTATGCGGCG AACTTCCGTC AAGAGAGTCG TGGTGCGCAT TCACGTGAAG ACTTCCTCGA GCGTGATGAT GAGAACTGGT TGTGTCACAG CTTGTTCGAT CCTCAGACCG AACAGATGAC CAAGCGTGCG GTAAACATGG AGCCTAAGCT TCGTGAAGCC TTCCCGCCGA TTAAGCGTAC CTACTAA
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Protein sequence | MSIPVREFDA VVIGAGGAGM RAALQISKEG KSCALLSKVF PTRSHTVSAQ GGITVALGNA HEDHWEQHMY DTVKGSDFIG DQDAIEFMCQ TGPEAIIELE HMGLPFSRFD NGKIYQRPFG GQSKNFGGEQ AARTAAAADR TGHALLHCLY QQNVKHKTEV FSEWYALDLV KNEDGAIVGC TAIEIETGEI VYFKSKATIL ATGGAGRIYA STTNAHINTG DGVGMAMRAG VQMQDMEMWQ FHPTGIAGAG VLVTEGCRGE GGYLLNKDGE RFMERYAPNA KDLASRDVVA RSMMTEIREG RGLDGPLGPH CLLKLDHLGK ETLEARLPGV CELSRTFAHI DPADGPIPVL PTCHYMMGGL PAKVSGQVIR KNEDGSESDV VGLFAVGEIA CVSVHGANRL GGNSLLDLVV FGRAAGQHLG KALDETADPK EASADEIAKS LERLNRWESN KDGEDPAQIR KDLQLCMQLN FSVFRTGEAM AEGLEELKAI RERLANAKLS DNSREFNTQR IECLELDNLM ATAIATAYAA NFRQESRGAH SREDFLERDD ENWLCHSLFD PQTEQMTKRA VNMEPKLREA FPPIKRTY
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