| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1652 |
|---|
| Symbol | |
|---|
| ID | 4923271 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1899219 |
|---|
| End bp | 1899566 |
|---|
| Gene Length | 348 bp |
|---|
| Protein Length | 115 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640163214 |
|---|
| Product | putative succinate dehydrogenase, hydrophobic subunit |
|---|
| Protein accession | YP_001093778 |
|---|
| Protein GI | 127512581 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2142] Succinate dehydrogenase, hydrophobic anchor subunit |
|---|
| TIGRFAM ID | [TIGR02968] succinate dehydrogenase, hydrophobic membrane anchor protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000439966 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTAACAA ATGCAGCGAG TCTTGGACGC AGTGGCGTTC ATGATTTTAT TCTTCTTCGT
GCTAGTGCCG TGATCCTTAC TTGTTACACC ATTTTCTTAG TAGGATTCAT CGCCGCTAGT
GCGCCTCTCA CTTATGACGT ATGGCACGGT TTGTTCAGTG CTTTGCCGAT GAAAGTGTTT
ACGCTTCTTG CCCTGGTCGC CATCCTGGTT CACGCCTGGA TCGGTATCTG GCAGGTGCTC
ACCGACTATG TTAAGCCGGT AGCCGTCCGT GGCGTACTCC AATTCGTCTT CGTCGTAGCA
GCGCTTTCTT ACCTGGCTGC TGGCATTGTT ATTGTGTGGG GTGTTTAA
|
|---|
| Protein sequence | MVTNAASLGR SGVHDFILLR ASAVILTCYT IFLVGFIAAS APLTYDVWHG LFSALPMKVF
TLLALVAILV HAWIGIWQVL TDYVKPVAVR GVLQFVFVVA ALSYLAAGIV IVWGV
|
|---|
| |