| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1645 |
|---|
| Symbol | |
|---|
| ID | 4921151 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 1886174 |
|---|
| End bp | 1887544 |
|---|
| Gene Length | 1371 bp |
|---|
| Protein Length | 456 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640163207 |
|---|
| Product | sigma-54 dependent trancsriptional regulator |
|---|
| Protein accession | YP_001093771 |
|---|
| Protein GI | 127512574 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGTAACC GTAAGAGGAA CTTAACTCAC AAGGAACGTA ACATATTGGT ATTAAACCTC
ACGGATGAAG CGTGTCTTAC AGATGAACAT ACCGATACTA CACAATGGCA TTTCAATCAT
GCAGGTACTC TTAGTGCGGC ATATAAAGCC TTAGAGAGCG CTCCCTGTCA GATCGCCATC
GCCATCATAG ATCTCCCTCA CCAGCAGGTG GTACTGCGCG CCATAGAACT ACTGTCCGCG
CGTCAACCCC GCTTACTCTG GCTGGCTATC TCCTTAGACA GCCCTAAAAA CCTGGGGAAC
CTTTGCTTCT GCTTTACCGA CTATTTCCTG GATTTTCATC ACCTTCCCAT TGATTGGCAG
CGCCTCGATC ACACCTTAGG GCACCTCTGT GGCATGGCCC AATTAAATGA GCAATGGAGT
AAGGAGAAAA CCACGCATCA ACCAAGGTCC TTCTTCTTTG GTGAATCAAG CGTGATGCAG
ACCCTGCGCG ATAATCTCTA TAAGATCGCT AAGTCAGATG AAACCGTACT GATAGGCGGC
GAAACCGGCA CGGGTAAGGG TCTGTGCGCC AACTTGATTC ATTCTCTATC GTCTCGCAAA
AATGGCCCCT TTATCACGGT GAATTGCGGC GCCCTGCCCC CAACCCTCAT TCATTCAGAG
TTGTTCGGCC ATGAGAAAGG CGCCTTCACC GGCGCCGACA GGCAATACAT AGGTCGAATA
GAGCGAGCTA ACAAGGGCAC CCTGTTTTTA GATGAAATAG GCGATCTGTC ACTCGAGTTA
CAGATCAATC TGCTGCAGTT TCTTGAAGAG CACTATATCG AACGTATCGG CGGCCAGAAG
TCCACCGAGG TGGATTGTCG CATCATCTTC GCCACCCATG TCAATTTGGA AAACGCCGTC
GAAGAGGGGA AATTCAGGGA AGATCTATTC TATCGAATCA ATATCATACA AATAGAGCTA
CCCAGCTTAA GAGAACATAA GCAAGATATC CCTCTCTTGG CTCAAGATTA CTTAACCAAA
CTCGCTCCAC CCAATCGTCA ATTTCAGTTT CACCAGGACG CGTTACATGC CATGACCAAC
TACCAGTGGC CAGGCAATGT GCGCGAACTT AAAAACCGCA TTCAACGCGC CATCATCATG
ACCGAAAGCG ACATCATTAC AGAAGCCGAC CTCGGCATTA AATTCGCTTG TTCGGCAAAC
GATGATCCCG ATGTGGTCGA TCTGGCGCAG CACAGAACCG AAATTGATAC CGAACTTCTA
TTGGCCGCCA TTAAGCGCAA TAACCACAAC ATCTCGGCGG CGGCCCGTGA ACTCAACATC
TCACGAACGA CTTTCTATCG CCTCATCAAG AAGTGCAAGA TAACGCTATA G
|
|---|
| Protein sequence | MSNRKRNLTH KERNILVLNL TDEACLTDEH TDTTQWHFNH AGTLSAAYKA LESAPCQIAI
AIIDLPHQQV VLRAIELLSA RQPRLLWLAI SLDSPKNLGN LCFCFTDYFL DFHHLPIDWQ
RLDHTLGHLC GMAQLNEQWS KEKTTHQPRS FFFGESSVMQ TLRDNLYKIA KSDETVLIGG
ETGTGKGLCA NLIHSLSSRK NGPFITVNCG ALPPTLIHSE LFGHEKGAFT GADRQYIGRI
ERANKGTLFL DEIGDLSLEL QINLLQFLEE HYIERIGGQK STEVDCRIIF ATHVNLENAV
EEGKFREDLF YRINIIQIEL PSLREHKQDI PLLAQDYLTK LAPPNRQFQF HQDALHAMTN
YQWPGNVREL KNRIQRAIIM TESDIITEAD LGIKFACSAN DDPDVVDLAQ HRTEIDTELL
LAAIKRNNHN ISAAARELNI SRTTFYRLIK KCKITL
|
|---|
| |