| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1638 |
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| Symbol | |
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| ID | 4923232 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1874888 |
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| End bp | 1876702 |
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| Gene Length | 1815 bp |
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| Protein Length | 604 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163200 |
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| Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
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| Protein accession | YP_001093764 |
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| Protein GI | 127512567 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAAATT CTTCGAAAAG TGAAGTTGGC AGCGTTTTTC TCAGACTGCT CACTTATCTT
GTCCCGCTCA AAGGGGTGTT ATTTTTGTCT GTGTTTGGCC TAGTGCTTTA CGGCTTGGTG
GACGCAACCT TTATTTATTC AATTAAACCT TTTATTGATC AAGGTTTTGC CAGCAATGTG
CCGACCACGC CTGGCTTGGT TGAAGGAGTC GACCTTGGCA TGGGCGGCGG CTTTAACTCC
GACAGCGACG TGCTCAAAAC TGCACCTTTC GTGGTGATTG GCCTGTTTAC CCTGAGGGGC
CTGGCTAACT TTCTCTCCAC CTATGGGATC TCTTACATCA GTGCGCGCAT GATCATGGAT
ATGCGTCAGC AGGTGTTTGA GCATTACCTG AGATTGCCAG TGAGCTATAT CGACGCCGAA
AGCAGCGGTA ACTTGATCTC CCGGGTGACC TTCGATACCG AACAGATCGC CAGGGCATCG
GGCAGTGCGC TGATCACCAT AGTGCGTGAC GGCATCACAG TGATCGGCAT GCTGGGGGTG
ATGTTCTACA ACTCCTGGAA ACTCTCGCTC TGTATCCTGA TTGTCGGGCC CCTTATCGGC
TTGGTGATTG CCGTGGTCAG CCGAAAGTTT CGCAAGGTCT CTAAACAGAT CCAGACCGCC
ATGGGCGGTG TGACCTCAGT TACCGAGCAG ATGATCAAGG GCCACAAGAA TGTGTTGGTC
TTCGGTGGTC AACAGGCTGA GTCGCAACGT TTTGCCAAGG TGAACGACGA TAACCGCTCG
CGCACCATGA AACTGGCTCT GGCCCAGGCA ATCAGTCAGC CCTTGGTGAT GGTCATCGGT
TCTCTGGCGC TAGCCTTCGT GTTATACGCC TCGAGCCTTG AGAGCATGCG CGCCGACCTT
ACCGCGGGTA CCTTCGCCAC TATCTTGGCG GCCATGCTCG CCATGTTGCA GCCAATCAAG
AGCCTAACCC GCGTCAACGC CGAGTTTCAG CGTGGTATCG CCGCCTGTAG TACCATCTTT
GCCGTGTTAG ATACCCCGGC CGAGGTGGAT AACGGCACCT TCGAGACGAA AAGAGTCGAG
GGTCGCTTGA GCTTCGATAA GGTCAACTTC CGCTACAACA ATCAGGAAGG CTTGGCGTTA
AAAGAAGTGG ATTTTCAGGT TAATCCGGGT GAAACCCTGG CCCTGGTGGG ACGCAGTGGC
TCGGGTAAGT CGACCATTGC CAGCCTGATC ACCCGCTTCT ATTCGGATCT CGACAGCGGT
GATATTCGCT TGGATGATGT CAGCCTGAGA GATTACAAGC TGGCGGCGCT GCGCCGTCAG
GTGGCATTGG TGTCACAGCA GGTGACGCTG ATCAACGATA CCATAGCGGC GAACATCGCC
TATGCCTATC CGGGCGAGGT CACCGAGGAG CAGATCATCG ATGCGGCTAA GCTCGCCAAT
GCCTGGGAGT TTATCTGCAA CATGCCTGAG GGGATCTATA CCCAGGTTGG CGAAAACGGC
GTCATGCTCT CGGGTGGTCA GCGCCAGCGT ATCGCCATTG CCAGGGCGAT ACTGCGCGAT
GCGCCGATCT TGATCCTCGA TGAGGCAACC TCGGCGCTGG ATACCGAGTC GGAGAAGGCT
ATTCAGACGG GTCTGGATAA CCTCAGACAG AATCGCACTT CGATCGTGAT CGCTCACCGT
CTGTCGACCG TCGAAAATGC CAACCAGATC TTGGTGGTGG ATCAGGGCAA GGTGGTCGAG
CGCGGCACCC ATAGCGAGCT ACTGGCCAAG CAGGGGATCT ATTACAACCT GTACCAGATG
CAGTTTGGTA GCTAA
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| Protein sequence | MTNSSKSEVG SVFLRLLTYL VPLKGVLFLS VFGLVLYGLV DATFIYSIKP FIDQGFASNV
PTTPGLVEGV DLGMGGGFNS DSDVLKTAPF VVIGLFTLRG LANFLSTYGI SYISARMIMD
MRQQVFEHYL RLPVSYIDAE SSGNLISRVT FDTEQIARAS GSALITIVRD GITVIGMLGV
MFYNSWKLSL CILIVGPLIG LVIAVVSRKF RKVSKQIQTA MGGVTSVTEQ MIKGHKNVLV
FGGQQAESQR FAKVNDDNRS RTMKLALAQA ISQPLVMVIG SLALAFVLYA SSLESMRADL
TAGTFATILA AMLAMLQPIK SLTRVNAEFQ RGIAACSTIF AVLDTPAEVD NGTFETKRVE
GRLSFDKVNF RYNNQEGLAL KEVDFQVNPG ETLALVGRSG SGKSTIASLI TRFYSDLDSG
DIRLDDVSLR DYKLAALRRQ VALVSQQVTL INDTIAANIA YAYPGEVTEE QIIDAAKLAN
AWEFICNMPE GIYTQVGENG VMLSGGQRQR IAIARAILRD APILILDEAT SALDTESEKA
IQTGLDNLRQ NRTSIVIAHR LSTVENANQI LVVDQGKVVE RGTHSELLAK QGIYYNLYQM
QFGS
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