| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1635 |
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| Symbol | |
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| ID | 4922117 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1870343 |
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| End bp | 1871698 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640163197 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001093761 |
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| Protein GI | 127512564 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3452] Predicted periplasmic ligand-binding sensor domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.28631 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACTTAA ATTCAAATAG AAAACATGTT GCGATCTTCG CACTGCTCTC CTGCTTGTTT
CTGCTCGCCT CAGTGATCAC CATCAGTGCG CTAACAAAAT ACTTTGTCGA CAATGAGATC
CAGCAAGAAG AGGAAAACCT GCGCAAGAAC CTGGCGCTGA TCCGCTTTAA CTTCGAGGCC
ACCATCTACA AAGACACCTA TCTGGCCGAT AGCCTGGCCA CTGTGGTGAC TATAGATCCC
GAATTTGCCA TGAAAAACTG GCATGTGATA GCCGCTAAAT TGCTCGACAA GGCGCAATAC
GTGCGCAACG TCGCCATCGC GCCAAACAAT GTTATCTCCT TAGTCTATCC CCTCAAAGGC
AACGAAGCGG CAGTTGGATT CGACTTTCGC ACCCAGCCAA ACCAGCTAAA GACTGTATTA
CTGGCCAAGG AGCAGCAGTC GGTGTATATC GCCGGCCCGG TAAATCTAGT GCAAGGCGGA
TTGGGACTCA TCGCACGCTA CCCTATCTTC GCCGACTACC CCAAAAACAC CCAATACTGG
GGCGGGGTGA GCGTAGTGAT GAACTATAAC CAATTACTCC ATGACACAGG GATCACCCAG
TTTCAAGGGG GCGATATCGC CATCAAGAAA CAGATCACCG CCAACGAACC CGAACAGGTT
TTCTACGGTG ATGCCAGCAT CTTCGACAAT GCCGATGTGA TCTACCCCAT CAAGTTACCC
AGCGCCACCT GGAATATGGC AGCAAGGTTT CATATTGAGA ATCTCGAACG CATCGGCCAG
CTGCGCCTTG GCATAGGCGG TATAGGTACG ATCGCGGCCT TTACCTTGTA TATGCTGATG
CTACTCCTGT TTCGCAACTA TCAGCACACC CACAGGGCGG CGCTGCACGA TGAATTGACC
CACCTACCTA ATCGGCGCTT CATCATCAAC GAACTCGACC GTCTGATGAA CAAACCAAAT
CAGCCCCCTT TTACCCTGCT CAACATAGAT CTCAACGACT TTAAAGGGGT TAACGACGAG
CTGGGGCATG AAGCGGGCGA TGAGCTGCTA AAATATATCG CCAATCGTCT TGTGACAGAG
GTTGGTATTA AGGGCTCGGT CGCCCGATTT GGCGGCGATG AGTTTCTGAT CTTGCTCTAT
GAGCTCACCG ACATGCAGGA AATCGAGGAG ATCATGGCGC ATATCACCCA GGCGATAGAA
TCCCAGCCCT TTAGCTGGCA GTCACAACAA CTGACGCCCT CACTCAGCAT AGGCTATGCA
ATCTATGATG GTCAGAATGC CGACATCAAA GAGTTGCTCT CAGATGCCGA CAAGCGGATG
TATCAACAAA AACGCGCCTA CCGGGAAAGT CGCTAA
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| Protein sequence | MHLNSNRKHV AIFALLSCLF LLASVITISA LTKYFVDNEI QQEEENLRKN LALIRFNFEA
TIYKDTYLAD SLATVVTIDP EFAMKNWHVI AAKLLDKAQY VRNVAIAPNN VISLVYPLKG
NEAAVGFDFR TQPNQLKTVL LAKEQQSVYI AGPVNLVQGG LGLIARYPIF ADYPKNTQYW
GGVSVVMNYN QLLHDTGITQ FQGGDIAIKK QITANEPEQV FYGDASIFDN ADVIYPIKLP
SATWNMAARF HIENLERIGQ LRLGIGGIGT IAAFTLYMLM LLLFRNYQHT HRAALHDELT
HLPNRRFIIN ELDRLMNKPN QPPFTLLNID LNDFKGVNDE LGHEAGDELL KYIANRLVTE
VGIKGSVARF GGDEFLILLY ELTDMQEIEE IMAHITQAIE SQPFSWQSQQ LTPSLSIGYA
IYDGQNADIK ELLSDADKRM YQQKRAYRES R
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