| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1633 |
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| Symbol | |
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| ID | 4922330 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1868364 |
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| End bp | 1869065 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640163195 |
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| Product | lipoprotein releasing system, ATP-binding protein |
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| Protein accession | YP_001093759 |
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| Protein GI | 127512562 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | [TIGR02211] lipoprotein releasing system, ATP-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00322127 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.820935 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCAAC AGGACAACTC TTTGTTACTT CAAGTCAGTA ACGTCAGCAA ACGCTACCAC
GAGGGGAGTA TAGATACTCA GGTGCTGAGC GGCGTTAATC TCAGTATCGC CAAGGGCGAG
CAGGTGGCTA TCATCGGCAG TTCTGGCTCG GGTAAGAGTA CCTTGCTGCA CATCATGGGC
ACGCTGGACA AACCCAGCAG CGGTCAGGTG ATGTTCGACG GAGAAGATCT TTACCAGCTT
TCCCCCTCGC GTCAGGCGGC GATCCGCAAC CAGGAGCTGG GATTTATCTA TCAGTTCCAT
CATCTGTTGC CCGAGTTTAC CGCCCTTGAG AATGTGGCTA TGCCTGGGCT CATTCAAAAG
CGCCCGCGTC AGGAAGTCGA GCAGGAGGCC AAAGAGCTGC TCAGCCGCGT GGGCCTTGGC
CACCGACTAC ATCATACCCC GGCGGAGATG TCAGGTGGCG AGCGCCAACG CACCGCGATA
GCCAGGGCGC TGATCAATCG TCCTAAGTTG GTGTTGGCCG ATGAGCCAAC GGGCAACCTG
GACGCGGCCA GCGGCGATAG TGTCTATGAG CTTATTCGAG AGCTGGGTAG CCAGCTGGGT
ACGGCCTTTG TGGTGGTCAC CCATGATCCT AAGCTTGCGG CGCGCATGGA CAGACAGCTG
AAGATGCAAG ATGGTCAGTT AAGCGCCTGG GAGATGGCAT GA
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| Protein sequence | MTQQDNSLLL QVSNVSKRYH EGSIDTQVLS GVNLSIAKGE QVAIIGSSGS GKSTLLHIMG
TLDKPSSGQV MFDGEDLYQL SPSRQAAIRN QELGFIYQFH HLLPEFTALE NVAMPGLIQK
RPRQEVEQEA KELLSRVGLG HRLHHTPAEM SGGERQRTAI ARALINRPKL VLADEPTGNL
DAASGDSVYE LIRELGSQLG TAFVVVTHDP KLAARMDRQL KMQDGQLSAW EMA
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