| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1630 |
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| Symbol | |
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| ID | 4923473 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1862893 |
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| End bp | 1866375 |
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| Gene Length | 3483 bp |
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| Protein Length | 1160 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640163192 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001093756 |
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| Protein GI | 127512559 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00676636 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.517783 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGCTT TTTCCATCCT CACACCACCT AAAGTCAAAG GGGTTAAGTC GCCCCAAACC
CTGAGCCAGT TAACCGGTGC CGCCCGGGCG ATAAGCCTGG CTAAGCTGTG CGAGCAGTAT
AGCAGCATGA CCTTAGTGGT GACGCCAGAC ACGCCCAGCG CGCTCAGGCT AGAGGCAGAG
CTAGGCTACC TGTTAGCGCC AAAATCGATC CCCGTGATGC TGTTCCCCGA CCGGGAGACC
TTGCCTTACG ACAGCTTCTC GCCCCACCAG GATCTGGTAT CTCAACGGCT TGAGACCCTA
TCGCGGATCC CAAGCGCCGG CCATAGCCTG GTGATCGTGC CCATGAGCAC CCTGATGGTG
AAGTTGCCGC CGCAATCATT CTTAACCGGC AACGTCTTGC TGCTCAGCAA GGGTGACAAC
TATCCCCTGG AAGCGGTGCG CAGCCAGCTG GTCAATACCG GCTATCATCA CGTGGAGCAG
GTGTATGAGC ATGGCGAGTT TGCCGTGCGC GGCTCTATCA TAGATCTCTT CCCCATGGGC
GCCCAGAGCC CCTATCGCAT CGAGCTGTTC GATGATGAGG TCGAATCGAT CCGCGAATTT
GACCCGGAAA CCCAACGCTC CAGCGGCGAG ATTGAATCGA TTCGCCTGCT GCCGGCCAAG
GAGTTCCCGA CCAATGACGC CGCCATCGAA GGGTTTCGCC AGCGTTACCG CCGCCAGTTT
GAGGTAGTGG TCAAGGAGCC GGAGTCCATC TATCAGATGG TGAGCCGCAA GGTGATGCCC
GCCGGGATCG AGAGCTACCT GCCCCTGTTC TTCGATGAGA CGGCGAGCCT GTTTGACTAT
CTGCCCGGCG AGTGCCAATT GGTGCAGGTG GGCGATCTAG AGAATGCTGC CAAACACCAC
CTGCAGGAAA TTAACCAGCG CTATGAGAAC CGCCGGGTCG ATCCCCTGAG GCCACTACTG
CCGCCAAAGG ATCTCTACCT GCTGACCGAA CAGGTCTTCG AGGCCTTCAA ACAGCTGCCG
CGCTTCCTAA TCAAGGGTAA TGAAGCCACT GGCACCTGTG TTGAGGCCCA ACTCGAGGCA
CTGCCTAACA TCGCCGCCAA CCATAAGCTG AAACAGCCAC TTATCAGCCT TAAAGAATTT
GCCAATGGCG GCACACCAAT TTTATTCTGC GTCGAATCGG AAGGCCGCCG CGAGGCGCTG
CTGGAACTGC TGGCCAAGAT AGAGATTAAA CCTGCGCTGC TGGACCATCT GGACAGCTTC
AGCCATAAGC CTCAGCCCTT TGGCTTAATT GTTGCGCCGC TGTCTCAAGG CGCCATCTAT
CACCCCAAGA AGGGTCCTAG CTGGGCACTG GTGTGTGAAA CCGAGCTGTT TGGTCAGCGC
ATCGCCCAGC AACGCAGACG AGATAAACAG CGTCAGGTAA GCCAGGATGC GCTTATCAAG
GATCTGGCCG AGCTCAAAGT CGGTCAACCC ATAGTGCATC TGGATCACGG CGTCGCCCTC
TACCAGGGAC TGGAAACCCT GGACACGGGC GGCCTGGTCG CCGAGTACCT GAAACTGGAA
TACGCCGGTG GCGACAAGCT CTATGTGCCT GTCGCCTCCC TCAACCTCAT CAGCCAGTAC
AGTGTCGGGG CCGATGATGC ACCGCAGCTC AACAAGCTGG GCAATGAGAG TTGGACCAAG
GCCAAACGCA AGGCGATCGA GAAGATCCGC GACGTGGCCG CCGAACTGTT AGATGTCTAC
GCCCGCCGTC AGGCCCGCCC CGGCGAGGCC TGCCGATTGG ATCGCGAAGA GTACGCTCAG
TTTGCCGGCA GCTTCCCCTT CGAAGAAACC GTGGATCAGG AAACTGCCAT CGACGCCGTG
CTCACCGACA TGTGCAGCCC CATCTCGATG GACCGCCTGG TGTGTGGCGA CGTAGGCTTC
GGTAAGACTG AGGTGGCGAT GCGCGCCGCC TTCGTAGCGG TCAACGACGG CAAGCAGGTG
GCTATCTTGG TACCTACCAC GCTACTGGCT CAGCAGCACT ATGAAAACTT TAAAGACAGG
TTTGCCGACT GGCCGATCAA GATAGAGGTG ATGTCACGCT TTAAGACTGC CAAGGAGCAA
CAGGCGGTGC TCAAGCAGCT GGAGCTTGGC CAGGTTGATA TCGTTATCGG TACCCATAAG
CTGCTGCAGT CTGAGGCCAA GTTTGAAAAC TTAGGCCTGC TTATCATCGA CGAGGAGCAC
AGGTTCGGCG TGCGTCAGAA GGAGAAGATC AAGGCCCTGC GCGCCAATAT TGATATTTTG
ACCCTGACGG CAACCCCTAT TCCGCGTACC CTCAACATGG CGATGTCTGG CATGCGCGAT
CTCTCCATCA TCGCCACGCC GCCAGCCAAG CGCCTGGCGG TTAAGACCTT CGTGCGCGAA
TATGATGATG CCACGGTGCG CGAGGCGCTG CTGCGTGAGA TCTTAAGGGG CGGCCAGGTC
TATTTTCTCC ACAATAGTGT CGAGACCATA GAGAAGCGCG CCCGGGAGAT TGAGGCGCTA
CTGCCCGAGG CGCGAGTTGT CACCGCCCAT GGTCAAATGA GAGAACGCGA CCTTGAAAAG
GTGATGTCTG ACTTCTATCA CCAGAAATAC AATGTGCTGG TGTGTACCAC CATCATAGAG
ACGGGCATCG ACGTACCCAG CGCCAACACC ATCATCATAG AGCGGGCCGA TAACTTCGGC
CTGGCGCAGC TGCATCAGCT CAGGGGCCGT GTGGGGCGCT CACATCATCA GGCCTACGCC
TATCTGATGA TGCCCCATCC AAAACGCATG ACCAAGGATG CCATCAAGCG TCTGGAGGCC
ATTGGCGCGC TGGAAGATCT CGGCGCAGGC TTCATGCTGG CGACTCAAGA TCTCGAGATC
CGCGGCGCGG GTGAACTCCT GGGCGATGAG CAGAGCGGTC ATATCTCCAA AATAGGCTTT
ACCCTCTACA TGGAGATGCT GGAAGATGCG GTGAAATCCC TCAAGGAGGG CAAGGAGCCT
TCCCTGGATC AGATGCTCAG GGGACAGTGT GAGATTGACC TGCGGATCCC AGCCCTGCTG
CCGGAAGATT ATGTGGGCGA CGTTAACATC CGCCTGTCGC TCTATAAGCG TATCGCCAAC
TGCGCCACCG CCCAGGCACT GGACGAATTA AAGGTCGAGC TGATCGATCG CTTCGGCCTC
TTGCCTCAGG CAACCAAGAA CCTGATGGAG GTCTCGCTGT TCAAGCACCA GGCAACGGCG
CTCGGCATCG CCAAGATAGA GATGCACGCC AAGGGCGGTA GCCTGGAATT TAATAACGAT
CACTGTGTAG ATCCTGGCTT TATCATCGGA CTATTACAGA GTCAGCCACA AAATTATCGT
ATGGACGGCC CAAGTAAGTT AAAATTCTTG ATGCCGACAG AGACAGACAA GGATAGGTTA
GCCCTGTTAT CCCTGATCAT CTCTCAACTC ATGCAACATC GCCTTGGAGA ACCGCGTGTT
TAA
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| Protein sequence | MNAFSILTPP KVKGVKSPQT LSQLTGAARA ISLAKLCEQY SSMTLVVTPD TPSALRLEAE
LGYLLAPKSI PVMLFPDRET LPYDSFSPHQ DLVSQRLETL SRIPSAGHSL VIVPMSTLMV
KLPPQSFLTG NVLLLSKGDN YPLEAVRSQL VNTGYHHVEQ VYEHGEFAVR GSIIDLFPMG
AQSPYRIELF DDEVESIREF DPETQRSSGE IESIRLLPAK EFPTNDAAIE GFRQRYRRQF
EVVVKEPESI YQMVSRKVMP AGIESYLPLF FDETASLFDY LPGECQLVQV GDLENAAKHH
LQEINQRYEN RRVDPLRPLL PPKDLYLLTE QVFEAFKQLP RFLIKGNEAT GTCVEAQLEA
LPNIAANHKL KQPLISLKEF ANGGTPILFC VESEGRREAL LELLAKIEIK PALLDHLDSF
SHKPQPFGLI VAPLSQGAIY HPKKGPSWAL VCETELFGQR IAQQRRRDKQ RQVSQDALIK
DLAELKVGQP IVHLDHGVAL YQGLETLDTG GLVAEYLKLE YAGGDKLYVP VASLNLISQY
SVGADDAPQL NKLGNESWTK AKRKAIEKIR DVAAELLDVY ARRQARPGEA CRLDREEYAQ
FAGSFPFEET VDQETAIDAV LTDMCSPISM DRLVCGDVGF GKTEVAMRAA FVAVNDGKQV
AILVPTTLLA QQHYENFKDR FADWPIKIEV MSRFKTAKEQ QAVLKQLELG QVDIVIGTHK
LLQSEAKFEN LGLLIIDEEH RFGVRQKEKI KALRANIDIL TLTATPIPRT LNMAMSGMRD
LSIIATPPAK RLAVKTFVRE YDDATVREAL LREILRGGQV YFLHNSVETI EKRAREIEAL
LPEARVVTAH GQMRERDLEK VMSDFYHQKY NVLVCTTIIE TGIDVPSANT IIIERADNFG
LAQLHQLRGR VGRSHHQAYA YLMMPHPKRM TKDAIKRLEA IGALEDLGAG FMLATQDLEI
RGAGELLGDE QSGHISKIGF TLYMEMLEDA VKSLKEGKEP SLDQMLRGQC EIDLRIPALL
PEDYVGDVNI RLSLYKRIAN CATAQALDEL KVELIDRFGL LPQATKNLME VSLFKHQATA
LGIAKIEMHA KGGSLEFNND HCVDPGFIIG LLQSQPQNYR MDGPSKLKFL MPTETDKDRL
ALLSLIISQL MQHRLGEPRV
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