| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1613 |
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| Symbol | rrmA |
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| ID | 4922460 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1845113 |
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| End bp | 1845925 |
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| Gene Length | 813 bp |
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| Protein Length | 270 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640163175 |
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| Product | 23S rRNA methyltransferase A |
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| Protein accession | YP_001093739 |
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| Protein GI | 127512542 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG2226] Methylase involved in ubiquinone/menaquinone biosynthesis |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0846237 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00925315 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATTACC TTTGTCCTAT CTGTCAGCGC ACGCTGTCAC TCATAGATCG CACCTGGTGC
TGTGAGGCAA ATCATAGGTT CGACTGTGCC AAAGAGGGTT ATGTCAACCT GCTGCCGGTG
CAGAAGAAGC GCTCTAAAGA TCCCGGCGAC AACAAAGAGA TGATGTTCGC CCGGCGGGAA
TTTCTCAACA AGGGCTACTA TGAGGCGATG AGCGATAGGG TAAATGCCCT AGCGCAGGAA
TATGCCGGTG AGGCTCGTCA TGGGCTGGAT ATAGGTTGCG GCGAGGGTTA CTACAGCCAC
AGACTGCTGC AAGCCATGGG CAGCGCCGAG TCGTTTAGCC TCAGTGGCTT GGATATCTCT
AAGTCGGCCC TTAAATATGC GGCCAAGCGC TATCCGGATA TTCAGTTTTG TGTGGCCAGC
AGTTTCGAGA TGCCCTTTGC CGATCAGAGT TTCGACTTCA TGTTGCGCAT CTACGCCCCG
TCGCAAGATG ACGAGCTTAG ACGCGTCGCT AAGCCGGGTG CCATTCTGAT CACCGTCTCG
GCGGGCCCGC AGCATCACTT TGCCCTTAAG CAGGTGATCT ATGACCAGCC AAGACCAAAT
CCCGAGGTGG ACAGCCAGAT AGTGGGGTTC GAGCGTCTGC ATAGCGAGCG ACTGACGCAA
TCTATGACCA TCAGCGACAG TGCGGATATC GGCCATTTTC TAGCGATGAC CCCCTACAAT
TGGAAATTTA CCGATGCGCA GCGCGCCTTG CTGACATCCA AGCCCTTGAC CTGTGAACTG
GATTTTAAGC TTGAGGTCTT TCGGGCCTGC TAG
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| Protein sequence | MNYLCPICQR TLSLIDRTWC CEANHRFDCA KEGYVNLLPV QKKRSKDPGD NKEMMFARRE
FLNKGYYEAM SDRVNALAQE YAGEARHGLD IGCGEGYYSH RLLQAMGSAE SFSLSGLDIS
KSALKYAAKR YPDIQFCVAS SFEMPFADQS FDFMLRIYAP SQDDELRRVA KPGAILITVS
AGPQHHFALK QVIYDQPRPN PEVDSQIVGF ERLHSERLTQ SMTISDSADI GHFLAMTPYN
WKFTDAQRAL LTSKPLTCEL DFKLEVFRAC
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