| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1611 |
|---|
| Symbol | sbcB |
|---|
| ID | 4924365 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 1842682 |
|---|
| End bp | 1844130 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640163173 |
|---|
| Product | exonuclease I |
|---|
| Protein accession | YP_001093737 |
|---|
| Protein GI | 127512540 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2925] Exonuclease I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0010565 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATAAGTG CCACTATTCA CACGCTACCT TACGCTATGC CTGCAAATAA CCTTCCCAGC
ATCTTCTGGC ACGACTACGA GACCTTCGGC GCAAACCCGG CCAAAGACAG GCCGTCTCAG
TTTGCCGGTA TTCGAACCGA TATGGATCTC AACATCATCT CTGAGCCGGT AACCTTCTAC
TGTAAGCAGG CCAGCGACTA CCTGCCCTCG CCTGAGGCGA TCCTTATCAC CGGGATCACG
CCCCAGCTCG CCAATCTCAA GGGGATGCCG GAAGCGGAGT TTATGGCCAG GATCAATAGC
GAGTTTTCCC AGCCCAACAC CTGTGTGGCC GGCTATAACT CGCTGCGATT CGACGATGAG
GTGACCCGCT ACGGTTTCTA CCGTAACTTT TTTGATCCCT ATGCGCGGGA GTGGCAGAAC
GGCAACAGCC GCTGGGACAT CATAGATCTG GTGCGCGCCT GTTATGCGCT AAGGCCCGAA
GGCATCAACT GGCCCGAGAA AGAGGATGGC AGCCCGAGTT TTAAGCTTGA GCACCTCACC
CAGGCCAACA ACCTAAGCCA TGACAAAGCC CACGACGCCA TGTCAGATGT GTACGCTACA
ATCGCCATGG CCAAGTTGAT CAAAGAGCGT CAGCCAAAGC TATTCGATTA CTACTTCAAT
CTGCGTAAGA AGAATGAAGT GAGCAAGCAG ATCGACGTGC TGAACATGCA GCCTCTGATA
CATGTCAGCT CCAAGATCAG CGCCCTTCAC GGCTGTACCA CGCTGATCGC GCCGGTGGCT
CACCATAGCA CCAATAAGAA TGCCATCATC TGCGTCAATC TGGCCATGGA TGTCACGCCG
CTGATTGAAC TGAGCGCCGA TGAGATCCGC GAGCGCATGT ATACCCCAAG GGTCGATCTC
GCCAGCGACG AGCTGCCAAT CGGCCTAAAA CAGCTACACA TCAACAAGTG TCCCTTTATT
GCAACCGCCA AGACACTCAC AGACGGCAAC GCCCAGCGTT TAGAGATAGA CAAGGAATTT
GCCCGCGCCC AATACAAGCG CCTGCGTCAG CACCCAGAGA TCAGAGAGAA ACTGGTGGCC
GTCTTCGATA CCGAGCATGG CAATGAGATA AGCGATCCGG ATCTGCAACT CTACAGCGGT
GGCTTCTTCA GTCACGCCGA CAAGAGCAAG ATGGAGATCA TACGTCATAC GGCGCCGCAA
CACTTAGCCG CGCTGGAGCT CGACTTTGAC GACGAGCGTC TGCCGGAAAT GCTGTTTCGC
TACCGCGCTC GCAACTATCC GGAAACCCTG GATGATACCG AGCAGCAACG TTGGCGCACC
TTCTGTCAGT CACGCCTGAA TGATCCTGAC TATATGATCA AGCTGGAAAC CTTGGTCAAC
GACACAGAGG CTGACGAAGA AAAACAGAAG TTATTGACGG CTTTGTGTCA TTATCTTAGC
AACCTGTAG
|
|---|
| Protein sequence | MISATIHTLP YAMPANNLPS IFWHDYETFG ANPAKDRPSQ FAGIRTDMDL NIISEPVTFY
CKQASDYLPS PEAILITGIT PQLANLKGMP EAEFMARINS EFSQPNTCVA GYNSLRFDDE
VTRYGFYRNF FDPYAREWQN GNSRWDIIDL VRACYALRPE GINWPEKEDG SPSFKLEHLT
QANNLSHDKA HDAMSDVYAT IAMAKLIKER QPKLFDYYFN LRKKNEVSKQ IDVLNMQPLI
HVSSKISALH GCTTLIAPVA HHSTNKNAII CVNLAMDVTP LIELSADEIR ERMYTPRVDL
ASDELPIGLK QLHINKCPFI ATAKTLTDGN AQRLEIDKEF ARAQYKRLRQ HPEIREKLVA
VFDTEHGNEI SDPDLQLYSG GFFSHADKSK MEIIRHTAPQ HLAALELDFD DERLPEMLFR
YRARNYPETL DDTEQQRWRT FCQSRLNDPD YMIKLETLVN DTEADEEKQK LLTALCHYLS
NL
|
|---|
| |