| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1595 |
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| Symbol | |
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| ID | 4922598 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1828348 |
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| End bp | 1829007 |
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| Gene Length | 660 bp |
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| Protein Length | 219 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640163157 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_001093721 |
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| Protein GI | 127512524 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00389314 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0112895 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGTT ACGATTTAGT GATATTCGAC TGGGATGGCA CCCTGATGGA CTCGGTCAGC
AAAATAGTGG CCTGCATGCA GCAGACCGCC AGGGAGCTGA GCATGATGGT GCCGAGCGAG
CAAGCAATTC GCGACATCAT AGGTCTGTCG ATGAATGAAG CGCTAAATGT GCTTCACCCC
AGCGCCTGCG AGCAGACCCG TCAGAATATG GTTAGCGTGT ATCGCCAGCA GTATCTGCAG
CTTAATCAAA CGCCGAGCCC AGTATTTGAC GGCGCCGAGC AGCTGCTCCT GTCTCTCAAG
GCGTCTGGGC ATCAACTGGC AGTGGCCACC GGCAAGGCCC GCGCCGGGTT AGACAGGGTG
CTCAATGAGA CAGGTTTTCA TCAGCACTTT GTGGCCAGTC GCTGCGCCGA TGAAGCCAAG
AGTAAGCCTC ACCCGCAGAT GCTGCACGAA CTGCTCTCAC TGCTCGATGT TGTTCCCGAG
AAGGCGGTGA TGATTGGCGA CTCGGTGCAC GATCTCAACA TGGCCAGCAA TGCGGGAATC
GATGGTATAG GAGTGAGTTA TGGCGCCCAT TCTGCGTTGA AGTTGCAAGA GGCCAACCCT
GTCGCCATCG CCGAGCATCC GCTGGCGCTG CTACCACTCA TCACTGGCGA GCCTCATTAA
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| Protein sequence | MKRYDLVIFD WDGTLMDSVS KIVACMQQTA RELSMMVPSE QAIRDIIGLS MNEALNVLHP
SACEQTRQNM VSVYRQQYLQ LNQTPSPVFD GAEQLLLSLK ASGHQLAVAT GKARAGLDRV
LNETGFHQHF VASRCADEAK SKPHPQMLHE LLSLLDVVPE KAVMIGDSVH DLNMASNAGI
DGIGVSYGAH SALKLQEANP VAIAEHPLAL LPLITGEPH
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