| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1587 |
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| Symbol | |
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| ID | 4922440 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1817076 |
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| End bp | 1817888 |
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| Gene Length | 813 bp |
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| Protein Length | 270 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163149 |
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| Product | DNA ligase |
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| Protein accession | YP_001093713 |
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| Protein GI | 127512516 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.382464 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.257911 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGAAC AGCTAAAATC AGAACCGCTT GAGCCAGCAC AACGACTCCC GGGCATACAG
TTGGCCGGGA GTCTCGAGGC CGACCGACCT ATATCAGAGT ATCTGGTGAG CGAAAAGTTC
GATGGCGTCA GAGGCCGCTG GACGGGAGAA CGTATGCTAA CCCGCTCGGG GCAGGTTATT
AGGCTCCCAG CTTGGTTTAC CAAGGGCTTT CCGACGGAGC CCTTAGATGG CGAACTGTGG
ATTGCTCGCC AGCAGTTTGA GGCGATCTCA GCCCTGGTGC GTGATAAAGA TGCCGACCCT
GAGCGTTGGC GCGCCGTTCA ATTTATGGTC TTCGATTATC CCACCATTGA TAGTCCCTTT
GCTGAGCGCT ATGCCCTCGC CGTTAAACGC TACGCAAATT TGTCGCCTTT CCTGCAGATC
ATCCCTCAGT GGCGAATTCA AGACAGTCAG GCGCTGAACG CCGCCTTGGA TGAGTGGGTG
GCTCAAGGCG CCGAAGGGCT TATGCTGCAT CACCAGGCTG CACACTATCA CGCAGGGCGT
AACGGTGACC TGGTAAAACT CAAACGCTAT CAAGATGCAG AGGCCAAGGT TATCGCTTAC
TTCGAGGGGA AGGGCAAGTA TAGAGGAATG ATGGGCGCCC TAGAGGTCGA AACAAATGAA
GGCATACGTT TTAAGTTAGG CACAGGATTC AGCGATGAGC AGCGCCGGCA TCCTCCGGCC
ATTGGCAGCA CGGTTACCTA CAAGTATTAT GGCCTCACCC ACAATGGTGT GCCCAGATTT
GCCAGCTTTA TGCGGGTACG GGAGCCCTTG TAA
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| Protein sequence | MPEQLKSEPL EPAQRLPGIQ LAGSLEADRP ISEYLVSEKF DGVRGRWTGE RMLTRSGQVI
RLPAWFTKGF PTEPLDGELW IARQQFEAIS ALVRDKDADP ERWRAVQFMV FDYPTIDSPF
AERYALAVKR YANLSPFLQI IPQWRIQDSQ ALNAALDEWV AQGAEGLMLH HQAAHYHAGR
NGDLVKLKRY QDAEAKVIAY FEGKGKYRGM MGALEVETNE GIRFKLGTGF SDEQRRHPPA
IGSTVTYKYY GLTHNGVPRF ASFMRVREPL
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