| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1583 |
|---|
| Symbol | yebU |
|---|
| ID | 4923725 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 1812330 |
|---|
| End bp | 1813790 |
|---|
| Gene Length | 1461 bp |
|---|
| Protein Length | 486 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640163145 |
|---|
| Product | rRNA (cytosine-C(5)-)-methyltransferase RsmF |
|---|
| Protein accession | YP_001093709 |
|---|
| Protein GI | 127512512 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
|---|
| TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.855297 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.597939 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTCAAC TAAATCAAAA TTTTATCAAT AGCATAGCGA AAGATATGCC GGATCATCTC
TCGATGGATG AATTTATCAG CTATTGCGCC AAGCCTTTAC GTCCCTCCAT CAGGGTCAAC
ACCCTCAAGA TAACGACTGC TGACTTTATC ACCATGATGA ATGCCAAAGG TTGGCAATTT
GAACCTGTGC CCTGGTGCGA GGACGGCTTC TGGGTCAAGG TGGATGACTC GGTGCAGCTG
GGTAACACGG TAGAGCATAT ACAGGGGCTG TTTTATATTC AGGAGGCCAG CTCCATGCTG
CCGCCTAAGG CACTGTTTCC CGAGCCGATA GAAGATGCGA CCTCCCTCAC CCTGCTGGAT
ATGGCCTCGG CGCCGGGGTC TAAGACCACT CAGCTTGCCG CCATGATGAA CAACCAAGGC
TTGTTGGTCG CCAACGAATA CTCCTCCAGC CGGGTCAAGG TGCTACACGC CAACGTGCAG
CGCATGGGCG CCAGTAATCT CGCCCTCACG CACTTCGATG CCAGAGTGTT TGGCAAGTAT
CTGTTCGAGA GCTTCGATGC CATACTGCTC GACGCCCCCT GCGGCGGTGA AGGCACGGTG
CGCAAAGACC CAGACGCCCT CAAACATTGG GACGAGAGTG AGATAGAGGC TATTGCCAGC
GTACAACGCG ACCTGATCGA GTCGGCCTTT CTGGCGTTAA AGCCCGGCGG CAGCCTGGTT
TATTCCACCT GTACCCTCAA TCGCCGCGAA AATCAGGACG TCTGTTTGCA CCTCAAGGCC
ACCTATGGCG ATGCGGTGCA GTTTGAATCC CTTGCCGGAC TCTTCCCCGG CGCCGAGAAG
GCCAGTACCA GTGAAGGCTT CCTCCATGTC TGGCCACAGA TCTTCGACAG CGAAGGCTTC
TTCATCGCCA AGCTAACCAA GATCGCCGCC GTGCCACGAA ACAGCGAGGA GCCACGCAAG
CAGAAGAACT TTCCTTTTAC CCCAATCGAC AAGAAGTCTC GCCAGGCCCT CTGCGACTAC
TTCGATACCA GCTTCGGCAT CAAACTCGAT GGTCAGGGGA TTTTGATGCA AAGAGACGAT
GAGTTTTGGC TGTTTCCGAC TAATGTCGAC CCGCTCATCG GTAAGATCCG TTTTCAGCGG
ATCGGTCTCA AGCTGGCCGA CGCCCTGAAG AAAGGCTTTA AGCCTAGACA CGAGGCCGTA
ATGGCGCTGG CCGACAGGTT ACGAGGGATC CCCCTTGATG AGGCTCAGGC GATTCAATAC
CTGATGGGGC GTGATATCGC CTTAACCAGC AAAGAGAAGC CACAAGGCGA GCGGTTGGTC
AGCTACCAAG GCGCCCACTT AGGCCTGGTG AAACATCTGG GCAATAAGCT GAAGAACAGC
CTGCCCAGAG ACCTGGTGCG GGATAAAATC TGCTCTTCTT CGGCGATGGC AGTAGATCAG
CAAGCTACTG GCGAAGACTA A
|
|---|
| Protein sequence | MVQLNQNFIN SIAKDMPDHL SMDEFISYCA KPLRPSIRVN TLKITTADFI TMMNAKGWQF
EPVPWCEDGF WVKVDDSVQL GNTVEHIQGL FYIQEASSML PPKALFPEPI EDATSLTLLD
MASAPGSKTT QLAAMMNNQG LLVANEYSSS RVKVLHANVQ RMGASNLALT HFDARVFGKY
LFESFDAILL DAPCGGEGTV RKDPDALKHW DESEIEAIAS VQRDLIESAF LALKPGGSLV
YSTCTLNRRE NQDVCLHLKA TYGDAVQFES LAGLFPGAEK ASTSEGFLHV WPQIFDSEGF
FIAKLTKIAA VPRNSEEPRK QKNFPFTPID KKSRQALCDY FDTSFGIKLD GQGILMQRDD
EFWLFPTNVD PLIGKIRFQR IGLKLADALK KGFKPRHEAV MALADRLRGI PLDEAQAIQY
LMGRDIALTS KEKPQGERLV SYQGAHLGLV KHLGNKLKNS LPRDLVRDKI CSSSAMAVDQ
QATGED
|
|---|
| |