| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1566 |
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| Symbol | |
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| ID | 4923691 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1796531 |
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| End bp | 1798789 |
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| Gene Length | 2259 bp |
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| Protein Length | 752 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163128 |
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| Product | ATP-dependent Clp protease, ATP-binding subunit clpA |
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| Protein accession | YP_001093692 |
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| Protein GI | 127512495 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | [TIGR02639] ATP-dependent Clp protease ATP-binding subunit clpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.121639 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.660499 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAAATA AAGATTTAGA GGTCACCTTG AATCTGGCGT TCCAACAAGC CAGAGACGCG
CGACACGAAT ACATGACCGT AGAGCATCTG CTATTGGCGT TAATCGATAA TCCTGCGGCT
CAAGAGGCGC TGCTCGCCTG CGGTGCAAAC CTCGATAAGT TAAGAGAAGA GGTGTCGAGT
TTCATCGAAC AGACCACACC TATCATCAGC GATCCCAACG ACGACAGAGA AACCCAGCCT
ACCTTAGGTT TTCAGCGCGT GCTGCAGCGC GCCGTCTTTC ATGTGCAATC CTCGGGGCGT
AACGAGGTGA CTGGTGCCAA CGTCTTAGTG GCCATCTTCA GCGAGCAGGA GTCTCAGGCG
GTTTACCTGC TCCGTAACGG TGAGATCACC CGTCTGGATG TGGTCAACTA CATCTCCCAC
GGCGTGTCAC GTGATGAGCT GGATAATGCT CAGGAACCCG AGCAGATTGA AGATCACAGT
GAATCGGAAG AGCGCAGCAA GCTGTCGCAA TTTACCGCTA ACCTCAACGA AGAGGCCCGC
AAAGGAAATA TCGATCCCCT GATCGGCCGC TCCGATGAGA TAGAGCGCTC GATTCAGATC
CTCTGCCGTC GCCGCAAGAA TAATCCACTA TTGGTGGGTG AGGCTGGCGT CGGTAAGACG
GCGATTGCCG AGGGGCTTGC CTATCGCATC GTCAACGACG AGGTTCCTGA GGTGATGGCT
GATGCCACTG TCTACTCGCT GGATCTCGGC GCCTTGCTGG CCGGTACCAA ATATCGTGGT
GACTTTGAGA AACGCTTTAA GAGCCTGCTC AAGGAGCTCT CGCAAGATAA GCACGCCATA
CTGTTTATCG ACGAGATCCA CACCATTATC GGCGCAGGCG CGGCATCTGG TGGCGTGATG
GATGCGTCTA ACTTGCTAAA GCCGCTGCTC TCTAGTGGCC ATCTTCGCTG TATGGGTTCG
ACCACCTTCC AGGAGTATCA GAGCATCTTC GAGAAAGATC GTGCCCTGGC CAGACGTTTC
CAGAAGGTGG ATATCAACGA GCCTTCGGTG GCGGAAACCA CTAAGATCCT ACAAGGTCTC
AAGAGCAAGT ATGAGGAGCA CCATGGCGTG CGCTATACCA TGGCGGCCTT GTCGGTGGCG
GCCCGTCTGG CGGATAAGCA TATCAACGAC AGACATCTTC CCGATAAGGC GATCGATGTG
ATCGACGAGG CGGGCGCCCG CATGGCGATG CAGCCAGCGA GCAAGCGCAA GAAGACCATA
GGTCAGGCGG AGATCGAGTC TATCATAGCT AAGATAGCGC GGATCCCTGA GAAGACGGTA
TCGGCCACCG ATAAGGATAT GCTGAAGAAC CTTGAGCGTA ATCTTAAGAT GGTGGTGTTT
GGCCAGGATA AGGCTATTGA AGCCTTAAGC TCGGCGATTC GCCTGTCACG CTCTGGCCTC
AGCGGCGCCC ACAAGCCAGT GGGTAGCTTC CTGTTTGCCG GTCCGACCGG TGTGGGTAAG
ACGGAGGTCA CCAGTCAGCT GGCGTCCTGT CTCAGCCTCA AGCTGGTGCG TTTCGATATG
TCCGAGTATA TGGAGAGTCA TACCGTGTCT CGCCTTATCG GTGCGCCGCC GGGCTATGTT
GGCTACGATC AGGGGGGCTT GTTAACCGAT GCGGTGATCA AGAACCCACA TTGCGTGGTG
CTGCTCGATG AGATCGAAAA GGCCCATCCT GATGTCTACA ACCTGCTGCT GCAGGTGATG
GACCACGGTA CCTTGACCGA CAACAATGGT CGCAAGGCGG ACTTTAGACA CGTGACCCTG
GTGATGACGA CCAACGCGGG CGTGCAGGAG ACGGTGCGTA AATCCATCGG CTTCAAGCAG
CAAGATCACA GCCAGGACGC TTTGTCTGAG ATCAACCGCG TCTTCTCGCC CGAGTTCAGA
AACCGCTTGG ATGAGATCAT CTGGTTCAAC CATCTGGATA TGACGGTCAT CGCCAAGGTG
GTCGACAAGT TCCTGGTCGA GCTGCAGGCG CAACTGGATG AGAAATCTGT GGTGCTGGAT
GTGAGCGATG ATGCCAGAAC CTTACTGGCT GAGAAGGGCT ATGATAAGGC GATGGGGGCA
CGGCCTATGG CCCGTGTGGT CACCGAGATG ATCAAACGAC CACTTGCCGA TGAGATCCTC
TTTGGCAAGC TGGAGAAGGG CGGTGTGGCC CATGTGGATG TCGACGGTGA TAAGCTGACC
ATCAAGATCG AACAGTCGGA GCGGCTGACA CAGGCGTAA
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| Protein sequence | MLNKDLEVTL NLAFQQARDA RHEYMTVEHL LLALIDNPAA QEALLACGAN LDKLREEVSS
FIEQTTPIIS DPNDDRETQP TLGFQRVLQR AVFHVQSSGR NEVTGANVLV AIFSEQESQA
VYLLRNGEIT RLDVVNYISH GVSRDELDNA QEPEQIEDHS ESEERSKLSQ FTANLNEEAR
KGNIDPLIGR SDEIERSIQI LCRRRKNNPL LVGEAGVGKT AIAEGLAYRI VNDEVPEVMA
DATVYSLDLG ALLAGTKYRG DFEKRFKSLL KELSQDKHAI LFIDEIHTII GAGAASGGVM
DASNLLKPLL SSGHLRCMGS TTFQEYQSIF EKDRALARRF QKVDINEPSV AETTKILQGL
KSKYEEHHGV RYTMAALSVA ARLADKHIND RHLPDKAIDV IDEAGARMAM QPASKRKKTI
GQAEIESIIA KIARIPEKTV SATDKDMLKN LERNLKMVVF GQDKAIEALS SAIRLSRSGL
SGAHKPVGSF LFAGPTGVGK TEVTSQLASC LSLKLVRFDM SEYMESHTVS RLIGAPPGYV
GYDQGGLLTD AVIKNPHCVV LLDEIEKAHP DVYNLLLQVM DHGTLTDNNG RKADFRHVTL
VMTTNAGVQE TVRKSIGFKQ QDHSQDALSE INRVFSPEFR NRLDEIIWFN HLDMTVIAKV
VDKFLVELQA QLDEKSVVLD VSDDARTLLA EKGYDKAMGA RPMARVVTEM IKRPLADEIL
FGKLEKGGVA HVDVDGDKLT IKIEQSERLT QA
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