| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1563 |
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| Symbol | |
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| ID | 4921977 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1793391 |
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| End bp | 1795610 |
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| Gene Length | 2220 bp |
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| Protein Length | 739 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640163125 |
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| Product | isocitrate dehydrogenase, NADP-dependent |
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| Protein accession | YP_001093689 |
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| Protein GI | 127512492 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG2838] Monomeric isocitrate dehydrogenase |
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| TIGRFAM ID | [TIGR00178] isocitrate dehydrogenase, NADP-dependent, monomeric type |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.37594 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGACA ATCCAACGAT CATCTATACG GAGACAGATG AAGCTCCGGC TCTCGCGACC
CTATCTCTGT TGCCTATTAT CAAGCATTTC ACCGCAGCCG CCGGAGTTGG CGTTGAGACA
CGCGACATCT CTTTATCTGG CCGTGTTATT GCCAATTTCC CTGAATTTTT AAAGCCAGAA
CAGCAGATCT CTGACGCGCT CGCCGAGCTG GGTGAGCTGG CCACTAAGCC AGAAGCAAAC
ATCATCAAGC TGCCTAATAT CAGCGCTTCT ATTCCACAGC TAAAAGCTTG TATCAAGGAG
TTGCAAGATA AGGATTATGC ACTGCCTAAC TACCCTGATG AGCCGCAAAA TGACGCAGAA
GCTGATATCA AGGCACGTTA CGACAAGATC AAAGGGAGTG CCGTTAACCC AGTGCTGCGT
GAAGGTAACT CAGATCGCCG CGCGCCGACT TCTGTAAAAA ACTACGCCAA GAAGAACCCA
CACTCAATGG GTGCCTGGAG CAGCGATTCT AAGTCTCATG TTGCGCACAT GGAAGCCGGC
GATTTCTACG GTAGCGAGCA GTCGGTGACT GTTGCCGAGC CAACCAGCAT AGATATCCTG
TTCGAAGGTA AAGATGGTAG CAGCAAGACA CTGAAAGCTG GCCTTAAGTT ACTGGCCGGT
GAGGTGATTG ACGCTTCTAC CATGAGCAAG AAAGCCCTGG TTGCCTTCAT GGAGCGCGAA
ATCGAAGCGG CTAAGGCCGA AGATGTATTG CTGTCTCTGC ACCTTAAGGC GACCATGATG
AAGGTTTCTG ACCCTATCAT GTTCGGTCAC GCGGTTAAGG TGTTCTACAA GTCACTGTTT
GAAAAGCATG GCCAGCTGTT TGAAGAGCTG GGCGTCGATG TTAACAATGG CTTTGGTGAC
GTCTATGCAA AGATAGCTAG CCTACCAGCC GACAAGAAAG CCGAGATCGA AGCCGATATC
GCCGCTATCT ACACCGAGCG TCCAGCCCTG GCTATGGTTG ATTCAGACCG TGGTATCACC
AACCTGCACG TGCCAAGCGA TGTGATCATC GATGCCTCTA TGCCTGCGGC GATTCGCTCT
TCAGGTCAGA TGTGGGGCCC AGATGGTAAG CTAAAAGACA CCAAGGCGCT GATCCCAGAT
CGTTGCTACG CAGGTGTATA CCAGGAAACT ATCCAATTCT GTAAAGAAAA TGGCGCCTTC
GATCCAACCA CCATGGGCAG CGTGCCAAAC GTGGGCCTGA TGGCGCAGAA GGCCGAAGAA
TATGGTAGCC ATGACAAGAC CTTCGAAATT GCCGCCGATG GTGTGGTCAA GGTTGTCGAT
GCCGCTGGAA ATCTGTTGAT GTCTCACGAC GTCGAAGCCG GTGATATCTG GAGAATGTGT
CAGGTTAAAG ACGCCCCTAT CCGTGACTGG GTTAAGCTTG CCGTTAACCG TGCGCGTCTG
TCATCTACGC CAGCCGTGTT CTGGTTAGAC GAGAACCGTG CCCACGATGC ACAGCTTATT
GCCAAGGTGA AGCAGTATCT GCCTGAGCAT GACACCGATG GACTCGAGAT CCACATCATG
GCGCCTGTGG CGGCGACTCG TTTCTCACTG GAGCGCATCA AGCAAGGTCT GGATACAATC
TCGGTAACCG GTAACGTGCT ACGTGACTAC CTCACCGATC TCTTCCCAAT TCTTGAGCTG
GGTACCAGCG CCAAGATGCT GTCAATCGTG CCGCTGATGA GTGGTGGTGG ATTGTTCGAG
ACTGGTGCCG GCGGTAGTGC GCCTAAGCAT GTTCAGCAGG TGGAGAAAGA GGGTCACCTA
CGTTGGGATT CTCTGGGTGA GTTCCTGGCA CTGGGCGCGT CACTCGAGCA CCTGAGCCAG
AACTATGGCA ACCCTAAGGC GCAGGTATTG GCCGATGCGC TGGACAATGC TATCGGTAAG
TTCCTCGATG AAAACCGTTC GCCATCACGT CGTGTGGGTG AGCTGGATAA CCGTGGTAGC
CACTTCTACC TAGCGATGTA CTGGGCACAG GCTTTGGCCG CACAGGATAG CGACGCTGAG
CTAAAAGCGC AGTTCGCGCC ACTTGCCGAA GCACTAACCA ATAACGAAGC TAAGATAGTT
GCCGAGTTAA ATGGTGCGCA GGGCCCTGCG GTTGATTTAG GCGGTTACTA TCGCCTGGAT
GCTGTTAAGG CGGAAGCGGC GATGCGTCCA AGCGCGACGC TGAACCAGCT GATAGGCTAA
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| Protein sequence | MNDNPTIIYT ETDEAPALAT LSLLPIIKHF TAAAGVGVET RDISLSGRVI ANFPEFLKPE
QQISDALAEL GELATKPEAN IIKLPNISAS IPQLKACIKE LQDKDYALPN YPDEPQNDAE
ADIKARYDKI KGSAVNPVLR EGNSDRRAPT SVKNYAKKNP HSMGAWSSDS KSHVAHMEAG
DFYGSEQSVT VAEPTSIDIL FEGKDGSSKT LKAGLKLLAG EVIDASTMSK KALVAFMERE
IEAAKAEDVL LSLHLKATMM KVSDPIMFGH AVKVFYKSLF EKHGQLFEEL GVDVNNGFGD
VYAKIASLPA DKKAEIEADI AAIYTERPAL AMVDSDRGIT NLHVPSDVII DASMPAAIRS
SGQMWGPDGK LKDTKALIPD RCYAGVYQET IQFCKENGAF DPTTMGSVPN VGLMAQKAEE
YGSHDKTFEI AADGVVKVVD AAGNLLMSHD VEAGDIWRMC QVKDAPIRDW VKLAVNRARL
SSTPAVFWLD ENRAHDAQLI AKVKQYLPEH DTDGLEIHIM APVAATRFSL ERIKQGLDTI
SVTGNVLRDY LTDLFPILEL GTSAKMLSIV PLMSGGGLFE TGAGGSAPKH VQQVEKEGHL
RWDSLGEFLA LGASLEHLSQ NYGNPKAQVL ADALDNAIGK FLDENRSPSR RVGELDNRGS
HFYLAMYWAQ ALAAQDSDAE LKAQFAPLAE ALTNNEAKIV AELNGAQGPA VDLGGYYRLD
AVKAEAAMRP SATLNQLIG
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