| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1562 |
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| Symbol | |
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| ID | 4921864 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1792324 |
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| End bp | 1793118 |
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| Gene Length | 795 bp |
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| Protein Length | 264 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163124 |
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| Product | pseudouridylate synthase |
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| Protein accession | YP_001093688 |
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| Protein GI | 127512491 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00777765 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACAGTA CAATGTCAGC ATTAGCATAC ACTCAGCCAA AAGTTTGCCT CGTGAGTCCA
AAAACACCCA GCGCCAATAA GCTAGCTTCT CGTCGTCAGG GAGCGAAAAC CAACGCCCCA
GCCACTAAAT CCAAAGGCAA TTCTTATCAG CCCAAACGAG GAGGGGGCGC CACCGCGGCA
GAGGGTGTCA AACACAAACC TAAGCTTAAA GCTAAGCCTA GGTCCAAACC TAAGCCAAAG
CCAAGGCCGC AGAACCCCAT CATAGTGCTG TTTAACAAGC CCTTCGATGT CTTGTGTCAA
TTCACCGATG AGCAGGGCCG TCAGACCTTG AAGGATTTCA TCCCGATTCA AGATGTCTAC
GCCGCCGGCA GGCTCGACAG AGACAGCGAA GGCTTACTGC TACTGACCAA CGATGGTCAG
CTACAGTCGC GCATCACAGA GCCCAAGAAA AAAACCGATA AGACCTACTG GGTGCAGGTC
GAAGGCATTC CCAGCGACGA GGCGATTCAG GCGCTAAGAG ACGGCGTCAC TCTCAAAGAT
GGTCCGACCC TGCCCGCCAA GGTGGAGCGT ATCGCCGAGC CGGATGTCTG GCCCCGCAAC
CCACCGGTGC GAGAGCGCAA ACAGATCCCC ACCAGTTGGC TGGCGATCAC CATCTGCGAG
GGACGCAACC GTCAGGTCAG GCGCATGACC GCCCATGTGG GCTACCCAAC GCTAAGACTG
ATTCGTTATA AAATAGGTCA ATGGAGCCTG AATGGCGTCG CAAATGGCGA ATATAAGGTG
TTGCCCCAAT CCTAA
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| Protein sequence | MHSTMSALAY TQPKVCLVSP KTPSANKLAS RRQGAKTNAP ATKSKGNSYQ PKRGGGATAA
EGVKHKPKLK AKPRSKPKPK PRPQNPIIVL FNKPFDVLCQ FTDEQGRQTL KDFIPIQDVY
AAGRLDRDSE GLLLLTNDGQ LQSRITEPKK KTDKTYWVQV EGIPSDEAIQ ALRDGVTLKD
GPTLPAKVER IAEPDVWPRN PPVRERKQIP TSWLAITICE GRNRQVRRMT AHVGYPTLRL
IRYKIGQWSL NGVANGEYKV LPQS
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