| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1547 |
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| Symbol | |
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| ID | 4921437 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1775223 |
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| End bp | 1776284 |
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| Gene Length | 1062 bp |
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| Protein Length | 353 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163109 |
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| Product | phospho-2-dehydro-3-deoxyheptonate aldolase |
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| Protein accession | YP_001093673 |
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| Protein GI | 127512476 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0722] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase |
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| TIGRFAM ID | [TIGR00034] phospho-2-dehydro-3-deoxyheptonate aldolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0462999 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCATTA AAACAGACGA ACTACGCACC ACATTACTAT GTAAGGCCAT TTCACCTGCT
AAACTCGCAT CTGAATACCC GCTTACTCAA GACGCCGCCG ACTACTTGGT TCAACAGAGA
CGTGAAGTTG AAGCCATTCT CACAGGTGAA GACAAACGTC TTCTGGTGAT CATCGGCCCC
TGCTCTATCC ACGACACCCA GGCTGCCATC GACTACGCTA AGCGTCTGGC CGTGCTGCAT
AAAGAACTCA AAGACTCACT CTGCATCCTG ATGCGCGTCT ATTTCGAGAA ACCTCGTACC
ACGGTTGGTT GGAAGGGACT GATCTCAGAT CCGGATCTCG ACGGTAGCTT TAATGCCAAC
AAAGGCCTTC GCCTGGCGCG TCACCTGCTG CAAGAGATCA CCGAGCTAAA CTTGCCTATC
GCCACCGAAT TTTTGGATAT GGTCAACGGT CAGTATATTG CCGATCTCAT CACCTGGGGC
GCGGTTGGCG CCCGTACCAC TGAGAGTCAG ATCCACCGTG AGATGGCCTC GGCGCTCTCC
TGCCCGGTCG GCTTTAAGAA CGGTACCGAC GGCAACATCA ATATCGCCAT CGACGCGGTG
CGCGCCGCCA AGGAACCCCA CATCTTCTAC TCGCCAGATA AAGATGGCGC CATGGCGGTT
TACCGCACCA GCGGTAACCC TTATGGCCAC ATCATACTGC GTGGCGGCAA GCAGCCGAAC
TACCATGAGG CCGACATTCA GGCTGCGGCG CAGAAGCTTA AAGACGTGGG CCTGTCTCAC
CGCATGGTGG TGGACTTTAG CCACGGCAAC AGCCAGAAAC AGCATAAGCG TCAACTCGAA
GTCGCCAAAG ATATCATGAC GCAGGTCGCC TCAGGCTCGA CCGCGATTGC CGGCATCATG
GCAGAGAGCT TTATCGAAGA GGGCAACCAG AAGGTGGTGG CCGGTGAACC ACTGATTTAC
GGTAAGAGCA TTACAGATGC CTGCCTCGAC TGGGCCGACT CAGAAAAGCT GCTGCGAGAC
CTTGCTGCAG CCTCCAAGGC GCGCATGGCA AAGCTTAGCT AA
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| Protein sequence | MTIKTDELRT TLLCKAISPA KLASEYPLTQ DAADYLVQQR REVEAILTGE DKRLLVIIGP
CSIHDTQAAI DYAKRLAVLH KELKDSLCIL MRVYFEKPRT TVGWKGLISD PDLDGSFNAN
KGLRLARHLL QEITELNLPI ATEFLDMVNG QYIADLITWG AVGARTTESQ IHREMASALS
CPVGFKNGTD GNINIAIDAV RAAKEPHIFY SPDKDGAMAV YRTSGNPYGH IILRGGKQPN
YHEADIQAAA QKLKDVGLSH RMVVDFSHGN SQKQHKRQLE VAKDIMTQVA SGSTAIAGIM
AESFIEEGNQ KVVAGEPLIY GKSITDACLD WADSEKLLRD LAAASKARMA KLS
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