Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1544 |
Symbol | |
ID | 4923779 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1772921 |
End bp | 1773580 |
Gene Length | 660 bp |
Protein Length | 219 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640163106 |
Product | TetR family transcriptional regulator |
Protein accession | YP_001093670 |
Protein GI | 127512473 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAACCTT ATCCTATAAA AAAGTGTACT ATGGGGTATC AAAAGTTAGA GGAGGTGTTT ATGCGACCAT CGAGTTTGAG AAAGCGGCAG AAGTATTTGC AGGTAGCCGC AGAACTCTTT TTAGAGCAGG GCTATGAAGG CACCAGCCTA GATCAGTTGA TAGAGCATTG TGGTGGCTCA AAGCTTACCT TGTATAACTA CTTTAATGAT AAACAAGGCC TGTTAAAAGC CGTGGTTGTT GAACTGACCG AACGCCTGCA ACTGGGGTTA AGCATCGACG TAGATGCCGA TAGAGTATTT AGGGAAGAGT TATTGTCTTT CGCGTTGAAA TATTTGGAGT TTATCTATCA CCCTGAGCTC TTGAAGTTGG CGCGCTTACT GATGACACAG ACAAAAACCG CACCGGAATT AGTGGCATTT TTTCTTGAGC GAAGTTCAGG CCATTCTCAA CAAGCATTAC AGGATTATTT GATGCATCGA CAAGCGATGG ACAAACTCGT CATCACAGAC TTGGCCATAG CGAGCGAACA ATTTCTCGGT GCATTAAAGG GAAATCGTCA TTTCGAAGCC TTATTCGGTG GGCAAATGTT GACATCTGAT GAAATGAAAA TTTACGCAAA GCATGCAGTA GATAACTTTA TTCGCTGTTA TCAATCTTGA
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Protein sequence | MQPYPIKKCT MGYQKLEEVF MRPSSLRKRQ KYLQVAAELF LEQGYEGTSL DQLIEHCGGS KLTLYNYFND KQGLLKAVVV ELTERLQLGL SIDVDADRVF REELLSFALK YLEFIYHPEL LKLARLLMTQ TKTAPELVAF FLERSSGHSQ QALQDYLMHR QAMDKLVITD LAIASEQFLG ALKGNRHFEA LFGGQMLTSD EMKIYAKHAV DNFIRCYQS
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