| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1543 |
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| Symbol | |
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| ID | 4923182 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1771815 |
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| End bp | 1772873 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640163105 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001093669 |
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| Protein GI | 127512472 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCGTCA TCATGAAACA ACTTCTTCGC AAAACACAGG GCAACAAAAT TAAAAAAGCG
ATAATTATCA GCAGCATGAT GTTATTCGCT TCTCTGTTTT ATTATTACCA GTTTCCCAAA
GCAGGCTTGA TCAGCACAGA TAACGCCTAT GTTCAGGGGG AAATTTCGCA AGTGAGTGCC
GAGGTATCGG GCATTATTAA TCACGTCTAC ATAACCGATA ACCAATATGT AGAAGCAGGT
GAACTGCTGG CACAAATTGA CGACAGAGAT TATCTGGCTC AATACAATCA AGCCAAGGCA
GGACTGACCA TGGCGCAGGC GGCAATTGCC AATATAGATG AGCGTATAAA GCTACAGCAG
ATATCAATAA AACAGGTATC GACTCAGATA GACTCGACTA TGGCCGATGC CACATTTCAT
CGGGCGGAAT GGCATCGACT GCAAAACCTG TTAGATAAGG AACTCATTTC TCAATCACAG
TTTGAAGCGC AAACCAATAA GAACAATCAG GCGAAAGCGA AACTGGCTGC GAGCCAGTTA
CAGCTTAGTT CGGCCAAACA ACAACTCAAC ACCCTTAGGA GTGATAAGGC TCGTTTGAAT
GCCCAAGCCG AGCAGGCCAA TGCTGCGCTG GCACTGGCCA AACTAAGATT AGAGAATACA
CAGGTCAGAG CCCCCGTTGC CGGCATCATA GGTAATCGCG CCCTGCGCGC CGGACGCTTT
GCCAGTAAAG GCGCTCCCCT TCTGGCTATC GTTCCTGTCG AATCTATCTG GATAGAGGCC
AACTATAAGG AAACCCAAAT CACAAATATA TTGCCAGGTC AGCTTGTCGA CGTGATGCTC
GACAGCTTTC CCGAGGAACA CCTTAAAGGA CGGGTATTGA GCATTGCGCC AGCGACAGGC
GCGCAATTTG GTCTACTGCC ACCGGACAAT GCGACAGGCA ACTTCGTCAA GATCGTACAA
CGCGTTCCCA TCAAGATTGC CCTCGAGATC CCCAGGGCAC TCCAAGGCAG AATTGTACCC
GGCTTATCGG CTGAGGTAAC AATCGATACC AATCATTGA
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| Protein sequence | MVVIMKQLLR KTQGNKIKKA IIISSMMLFA SLFYYYQFPK AGLISTDNAY VQGEISQVSA
EVSGIINHVY ITDNQYVEAG ELLAQIDDRD YLAQYNQAKA GLTMAQAAIA NIDERIKLQQ
ISIKQVSTQI DSTMADATFH RAEWHRLQNL LDKELISQSQ FEAQTNKNNQ AKAKLAASQL
QLSSAKQQLN TLRSDKARLN AQAEQANAAL ALAKLRLENT QVRAPVAGII GNRALRAGRF
ASKGAPLLAI VPVESIWIEA NYKETQITNI LPGQLVDVML DSFPEEHLKG RVLSIAPATG
AQFGLLPPDN ATGNFVKIVQ RVPIKIALEI PRALQGRIVP GLSAEVTIDT NH
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