| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1539 |
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| Symbol | |
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| ID | 4922094 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1767142 |
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| End bp | 1768011 |
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| Gene Length | 870 bp |
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| Protein Length | 289 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640163101 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001093665 |
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| Protein GI | 127512468 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.014478 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGGAAT GGGAAGGGGT CAGCGAATTT GTCGCGGTGG CGGAGACAGA GAGTTTTACT
AAAGCGGGCA AGCGCTTAGG GATCTCTACC GCCCAGGTGA GTCGCCAGGT AGGCGCGCTG
GAACAGAGGC TGGATACCAA GCTGCTCTAT CGCACCACCC GCAAGGTCTC CATGACGGAA
GAGGGGCATC TCTACTACCG GCATTGCCGT CAGGTGCTCG ATGGCCTGGA AGAAGCCGAG
CGCGCGCTGA GCAGCTTAAG AGGCCTGCCC CAGGGGCTAT TGAGGATGAC GGCGCCGGTG
GCCTATGGCG AGAAATATAT CCTGCCTGTC GTCAACGACT TCCTACTCGC CTACCCCAAC
GTCGAGGTGG ATATCGCCCT CACCAACCGT CAGGTGAGAC TGGTGGATGC GGGCATAGAC
CTGGCCATTC GCATCGGCAA GTTGGCCGAT TCTAGTTTGA TCGCTAAGCG GATCAGTCAG
CGGATCAACT ATGTGTGCGC CTCACCGGAC TATCTCAAGC GGTTCGGCGA GCCCCACAGC
CTGTCTGAAC TGAGCCGGCA CAACTGCCTG ATCGGCAACC ATGACTACTG GCGCTTTCTC
GAACAGGGGC GCGAGCGCCA GCTTAAGATA AAGGGCAATC TGAGGTGTAA TACCGGCCAC
GGCCTAAGAG ACGCGGCGCT TAAGGGACTG GGACTGGTGC AGCTGCCCAA CTACTATATA
GGCCAGGATC TTAAGGCGGG CCGTTTAGTG TCAGTGCTCA ACGCCTATCA GGAGCCAAAC
GAAGGTGTCT GGGCCCTCTA TCCCCAAAAC CGTCACCTCT CACCTAAGGT GAAGTTGATG
GTAGAGTTTC TCGACCGCGC CCTGCCCTAA
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| Protein sequence | MQEWEGVSEF VAVAETESFT KAGKRLGIST AQVSRQVGAL EQRLDTKLLY RTTRKVSMTE
EGHLYYRHCR QVLDGLEEAE RALSSLRGLP QGLLRMTAPV AYGEKYILPV VNDFLLAYPN
VEVDIALTNR QVRLVDAGID LAIRIGKLAD SSLIAKRISQ RINYVCASPD YLKRFGEPHS
LSELSRHNCL IGNHDYWRFL EQGRERQLKI KGNLRCNTGH GLRDAALKGL GLVQLPNYYI
GQDLKAGRLV SVLNAYQEPN EGVWALYPQN RHLSPKVKLM VEFLDRALP
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