| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1535 |
|---|
| Symbol | |
|---|
| ID | 4920945 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1763680 |
|---|
| End bp | 1764291 |
|---|
| Gene Length | 612 bp |
|---|
| Protein Length | 203 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640163097 |
|---|
| Product | fumarylacetoacetate (FAA) hydrolase |
|---|
| Protein accession | YP_001093661 |
|---|
| Protein GI | 127512464 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0341155 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCGCTTGG TTAAATATCT AGAGCAACAG GTGACGCCGA GTAAGATAGT CTGCGTCGGG
CGAAACTATG TCGAGCACAT CAAGGAGCTT AACAACGAGA TGCCCGAAGA GATGGTGCTG
TTTGTTAAGC CTAACTCGGC AATATCCGAG ACGTTACTCA GCACAGATCA AGAGCCGCTA
CACTATGAGG CCGAGCTCTG TTTCCTTGTG AAGGCGGGCG GGTTTGAGGC TGTGGGCGTC
GGTTTAGATC TCACCAAACG TCAGCTACAG AGCCGTCTCA AAGCCAAGGG GCTGCCCTGG
GAGCGGGCCA AGTCTTTCGA TGGCGCCGCG CTGTTTAGCG AGTTTGTGCC TTTTGATGGC
GATCTCGATT CACTCTCGTT TCGCCTGAGC GTCGACGATG AGCTGCGCCA GCAGGGGGAT
GTCGCATTAA TGCTTAATCG ACCCGAGGCC ATGTTAGCCG AGATAGCCAG TTTTATGACT
CTCGAAGATG GCGACATCCT GATGACAGGC ACACCCAAGG GCGTTGGGCA GATAGTTAAG
GGTGAGCACT TTACCCTGGA CCTCTATCAA GAGGAAAAGC AGCTCGTCAG CCAAAGCTGG
GTGGCACAGT AA
|
|---|
| Protein sequence | MRLVKYLEQQ VTPSKIVCVG RNYVEHIKEL NNEMPEEMVL FVKPNSAISE TLLSTDQEPL
HYEAELCFLV KAGGFEAVGV GLDLTKRQLQ SRLKAKGLPW ERAKSFDGAA LFSEFVPFDG
DLDSLSFRLS VDDELRQQGD VALMLNRPEA MLAEIASFMT LEDGDILMTG TPKGVGQIVK
GEHFTLDLYQ EEKQLVSQSW VAQ
|
|---|
| |