| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1528 |
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| Symbol | |
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| ID | 4924146 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1751441 |
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| End bp | 1751983 |
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| Gene Length | 543 bp |
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| Protein Length | 180 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640163083 |
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| Product | OmpA domain-containing protein |
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| Protein accession | YP_001093654 |
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| Protein GI | 127512457 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
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| TIGRFAM ID | [TIGR02802] peptidoglycan-associated lipoprotein |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000113524 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.565826 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGATCTGA ATAAGCTGTT TAAAGCTATG GTTGTTGCCC TGCCGATTAT GGCGATCAGC
GCGTGTAGCT CAACCTCTGA GTCACAAACC GATGCGACAA GCTCTATGAG CGGCAGCGAA
AGCAGCGAAA TGAATGCCGG TGGTGGCGTT GAGACGGGCG GTGTAGCACC TATCCTGACA
CCAGAAGAGC AGCAACGTAT TAAGTACCAG GAACTGCGTA AAGAACATAT CATCTACTTC
GATTTCGACC GCAGCTCGGT ATCCTCTGAT TTCTCAGAAG TGCTTAATGC CCACGGTGAA
TACCTGCTCG AGCATCCAAA TGTTCGCGTG ATGATCGAAG GCCATGCCGA TGAGCGTGGT
ACGCCAGAGT ACAACATCGC GCTGGGTGAG CGCCGTGCTA AGGCCGTTGC CAAGTACCTG
CAAAGCATGG GCGTGCTACC GAGCCAGATG AGCATAGTGA GCTATGGTGA AGAGAAGCCA
CAAGATTTCT CTCGCACCGA TGATGGCTTT GCTAAGAACC GTCGTGCGGT ATTGGTTTAC
TAA
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| Protein sequence | MDLNKLFKAM VVALPIMAIS ACSSTSESQT DATSSMSGSE SSEMNAGGGV ETGGVAPILT
PEEQQRIKYQ ELRKEHIIYF DFDRSSVSSD FSEVLNAHGE YLLEHPNVRV MIEGHADERG
TPEYNIALGE RRAKAVAKYL QSMGVLPSQM SIVSYGEEKP QDFSRTDDGF AKNRRAVLVY
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