| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1527 |
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| Symbol | tolB |
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| ID | 4924145 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1750081 |
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| End bp | 1751406 |
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| Gene Length | 1326 bp |
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| Protein Length | 441 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640163082 |
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| Product | translocation protein TolB |
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| Protein accession | YP_001093653 |
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| Protein GI | 127512456 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000832022 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAAACT TGGGAAGATG GCTCATCTTG GGGCTGGCAT TTTTAACCAT TCCGGCCAAG
GCGGCATTGG ATATAGTGAT CACCGAAGGG GTCGATGCGG CGCGTCCTAT CGCCGTGGTG
CCTTTTGTGT GGCAGGGGAG CACACCCATG CCGCAACAGA TCTCTGATGT GGTGATGTCG
GATCTGACCC GCAGCGGTAC CTTTAAGCCA ATGGACGAAT TGGGTCTGCC ACAGCGCAAT
TTAGGTTCGC TGGCGCAGAT GGATTTGAAG GCCTGGTCGA ATGTGGCCGC CGAAGCTGTG
GTCATGGGCA CGGTTAAGCC TTATGGTCCA GATCAATATC TGGTTAATTT CGAGCTTATT
GATCTGGTTA AGGCGCAGAT GCAGTCTGGT GGCCCTCAGT CGGCCAGCGA ATATCTGCTC
GATAGCCGCG AGACAGTGAT CAGCAGCGCC CAGTTCAGGC AGTATGGTCA CAGAATCAGC
GACATCGTCT ATGAGAAGCT TACCGGTATT CGCGGTGCCT TCTTGACCCG CATCGCCTAC
GTGGTGGTGG ATCACAAGGC GAAATCACCC TATAAGTTGA TGATTGCCGA TTACGATGGC
TATAACGAGC AGATGCTGCT GCGCTCGCCC GAGCCGCTGA TGTCGCCAGC CTGGTCACCG
GATGGTCGCC GCTTGGCCTA TGTGAGTTTT GAGAACAAAC AGGCCGAGGT TTTTGTTCAG
GATATCTATA CTCAGCAAAG AACCAAGGTG ACCAGCTTTC CTGGCATCAA TGGTGCGCCT
ACCTTCTCGC CCGATGGCAA GAAGTTAGCG CTAACCCTGT CGAAAGATGG GCAGCCTGAG
ATCTATGTGG CGGATATTGC CACCAAGGCG ATAAAACGTG TTACCAACCA TTATGCCATC
GACACCGAGG CCTCATGGAC ACCCGATGGT AAGTCGCTGA TCTTCACCTC AGAGCGTGGT
GGTCGTCCGC AGATATATCA GGTGGCATTG GCATCGGGTA AGGTTACACG CTTGACCTTC
GAGGGGGAAT GGAACCTGGG CGGCTCTATC TCACCAGATG GTCGCAGCAT GGTGTTTGTG
AATCGCACCA ACGGCAAGTT CAATATTGCC CGTATGGATC TTGAGACGCG TTTTATGCAG
GTGCTGACGA CCACACGTTT GGATGAGTCG CCAAGTATAG CGCCTAACGG TACTATGGTT
ATCTATGGCA CCACCTATCA GGGCCAACAG GTGTTGGCGG CTGTCTCTAT GGATGGACGA
TTTAAGGCAA GATTGCCAGT GGGTCAAGGG GAGGTGAAGT CTCCTGCTTG GTCACCTTTC
TTATAA
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| Protein sequence | MKNLGRWLIL GLAFLTIPAK AALDIVITEG VDAARPIAVV PFVWQGSTPM PQQISDVVMS
DLTRSGTFKP MDELGLPQRN LGSLAQMDLK AWSNVAAEAV VMGTVKPYGP DQYLVNFELI
DLVKAQMQSG GPQSASEYLL DSRETVISSA QFRQYGHRIS DIVYEKLTGI RGAFLTRIAY
VVVDHKAKSP YKLMIADYDG YNEQMLLRSP EPLMSPAWSP DGRRLAYVSF ENKQAEVFVQ
DIYTQQRTKV TSFPGINGAP TFSPDGKKLA LTLSKDGQPE IYVADIATKA IKRVTNHYAI
DTEASWTPDG KSLIFTSERG GRPQIYQVAL ASGKVTRLTF EGEWNLGGSI SPDGRSMVFV
NRTNGKFNIA RMDLETRFMQ VLTTTRLDES PSIAPNGTMV IYGTTYQGQQ VLAAVSMDGR
FKARLPVGQG EVKSPAWSPF L
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